HTML QA ruleset report

Rule ID

Flag

Probe ID

Products

Description

Type

Contexts

XPath

nlm-core-rule-103

information

NLM-3-0000

JATS QA rules applying to the root element

Sanity Check - make sure Schematron rules are running.

report

/*[self::*:article]

nlm-core-rule-291

error

JATS QA rules applying to the root element

Checks whether the package contains a Thumbs.db file which should be removed before delivery.

report

/*[self::*:article]

not(false()) and ( oupfn:doc-available(concat('../Assets/', 'Thumbs.db'), base-uri()) or oupfn:doc-available(concat('Assets/', 'Thumbs.db'), base-uri()) or oupfn:doc-available(concat('assets/', 'Thumbs.db'), base-uri()) or oupfn:doc-available(concat('media/', 'Thumbs.db'), base-uri()) or oupfn:doc-available(concat('pdf/', 'Thumbs.db'), base-uri()) or oupfn:doc-available(concat('supplementary%20files/', 'Thumbs.db'), base-uri()) or oupfn:doc-available(concat('cover/', 'Thumbs.db'), base-uri()) )

nlm-core-rule-1

error

NLM-1-0001

JATS and BITS QA rules applying to all elements

No element in BITS/JATS may be empty, with the following exceptions: book-meta book-page-count book-part (only for chapters in a book skeleton) book-word-count break col edition (for a 1st edition only) ext-link (to a DOI) graphic hr inline-graphic issue label media mml:* page-count related-article related-object self-uri styled-content (for breaks and prompts) supplementary-material (for a reference to a cover image or MARC record) td uri volume x1 (although only white space content is allowed) xref, when child of contrib or title

report

*[not(tokenize(namespace-uri(/*),'/')[last()] = 'SCJATS-journalissue.xsd')]

not ( self::*:book-meta or self::*:book-page-count or self::*:book-part[@book-part-type eq 'chapter'] or self::*:book-word-count or self::*:break or self::*:col or self::*:edition[@designator = '1'] or self::*:ext-link[@ext-link-type='doi'] or self::*:graphic or self::*:hr or self::*:inline-graphic or self::*:issue or self::*:label or self::*:media or self::mml:* or self::*:page-count or self::*:related-article or self::*:related-object or self::*:self-uri or self::*:styled-content[@specific-use = ('breakAfter','prompt')] or self::*:supplementary-material[@content-type = ('cover','marc')] or self::*:td or self::*:uri or self::*:volume[ancestor::*:front] or self::*:x1[ not(string(.) = '') ] or self::*:xref[ parent::*:contrib or (parent::*:title and @ref-type = 'fn')] ) and count(child::*) = 0 and (normalize-space(string(.)) = '' or matches(.,'^\p{Z}*$'))

nlm-core-rule-5

error

JATS and BITS QA rules applying to DOIs

DOIs should only contain the characters "a-z", "A-Z", "0-9" and "-._;()/".

assert

*[not(tokenize(namespace-uri(/*),'/')[last()] = 'SCJATS-journalissue.xsd')][@pub-id-type = 'doi'][not(parent::*:mixed-citation)]

*[@book-id-type = 'doi']

*[@book-part-id-type = 'doi']

oupfn:is-valid-doi-strict(string(.))

nlm-core-rule-4

error

NLM-1-0004

JATS and BITS QA rules applying to DOIs

DOIs must start "10.nnn/", where nnn is a number.

assert

*[not(tokenize(namespace-uri(/*),'/')[last()] = 'SCJATS-journalissue.xsd')][@pub-id-type = 'doi']

*:related-article[@ext-link-type='doi']/@xlink:href

*[@book-id-type = 'doi']

*[@book-part-id-type = 'doi']

*:related-object[@document-id-type = 'doi']/@document-id

*:related-object[@source-id-type = 'doi']/@source-id

*:related-object[@object-id-type = 'doi']/@object-id

oupfn:is-valid-doi(string(.))

bits-core-rule-23

error

JATS and BITS QA rules applying to DOIs

DOIs must start "10.1093/" or one of the UPSO partner press prefixes. This rule checks against the PoolParty controlled vocabulary 'Publishers'.

assert

*[@book-id-type = 'doi']

*[@book-part-id-type = 'doi']

matches( text(), concat( '^(', string-join(document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'Publishers.rdf') )/rdf:RDF/rdf:Description/skos-publishers:has_doi_prefix/text(),'|'), ')/' ) )

bits-core-rule-24

error

JATS and BITS QA rules applying to DOIs

DOIs in OUP books must match the regular expression pattern "10.\d+/[a-zA-Z0-9]+}\.\d+\.\d+(v\d+|)".

assert

*[@book-id-type = 'doi']

*[@book-part-id-type = 'doi']

not( if (//*:book-meta/*:publisher/*:publisher-name[text() = 'Oxford University Press']) then true() else false() ) or matches( text(), '^10\.\d+/([a-z]+/|)[a-zA-Z0-9]+\.\d+\.\d+(v\d+|)$' )

bits-core-rule-38

error

JATS and BITS QA rules applying to DOIs

DOIs have a component after the ISBN that corresponds to the element it is applied to ("001" for "book", "002" for "front-matter-part", "003" for "book-part", "005" for "book-app").

assert

*[@book-id-type = 'doi']

*[@book-part-id-type = 'doi']

exists(/comment()[matches(.,'Converted to\s+(SC|)BITS')]) or not( if (//*:book-meta/*:publisher/*:publisher-name[text() = 'Oxford University Press']) then true() else false() ) or (replace(text(), '^10\.\d+/([a-z]+/|)[a-zA-Z0-9]+\.(\d+)\.\d+(v\d+|)$', '$2') = '001' and local-name(parent::*/parent::*) = 'book') or (replace(text(), '^10\.\d+/([a-z]+/|)[a-zA-Z0-9]+\.(\d+)\.\d+(v\d+|)$', '$2') = '001' and local-name(parent::*/parent::*) = 'book-part-wrapper') or (replace(text(), '^10\.\d+/([a-z]+/|)[a-zA-Z0-9]+\.(\d+)\.\d+(v\d+|)$', '$2') = '002' and local-name(parent::*/parent::*) = 'front-matter-part') or (replace(text(), '^10\.\d+/([a-z]+/|)[a-zA-Z0-9]+\.(\d+)\.\d+(v\d+|)$', '$2') = '003' and local-name(parent::*/parent::*) = 'book-part') or (replace(text(), '^10\.\d+/([a-z]+/|)[a-zA-Z0-9]+\.(\d+)\.\d+(v\d+|)$', '$2') = '005' and local-name(parent::*/parent::*) = 'book-app')

bits-core-rule-25

error

JATS and BITS QA rules applying to DOIs

DOIs must be unique.

report

*[@book-part-id-type = 'doi']

text() = preceding::*[@book-id-type = 'doi' or @book-part-id-type = 'doi']

nlm-core-rule-309

error

JATS and BITS QA rules applying to specified content elements and attributes

MathML must not contain deprecated @fontsize, @fontweight, @fontstyle, @fontfamily, @color, @background attributes.

report

not(parent::mml:mglyph)

nlm-core-rule-306

error

JATS and BITS QA rules applying to specified content elements and attributes

MathML length regex is defined in schema file common-types.xsd.

assert

matches(.,'^((-?([0-9]+|[0-9]*\.[0-9]+)*(em|ex|px|in|cm|mm|pt|pc|%))|0)$')

nlm-core-rule-307

error

JATS and BITS QA rules applying to specified content elements and attributes

MathML length regex is defined in schema file common-types.xsd. Also uses values for "simple-size"

assert

@mathsize

matches(.,'^((-?([0-9]+|[0-9]*\.[0-9]+)*(em|ex|px|in|cm|mm|pt|pc|%))|0|small|normal|big)$')

nlm-core-rule-213

error

JATS and BITS QA rules applying to specified content elements and attributes

Checks that @mathvariant attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'MathMLFont'.

assert

@mathvariant

. = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'MathMLFont.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-316

error

JATS and BITS QA rules applying to specified content elements and attributes

MathML @notation values are defined in MathML spec.

assert

mml:menclose/@notation

. = ( 'actuarial', 'longdiv', 'radical', 'box', 'roundedbox', 'circle', 'left', 'right', 'top', 'bottom', 'updiagonalstrike', 'downdiagonalstrike', 'verticalstrike', 'horizontalstrike' )

nlm-core-rule-308

error

JATS and BITS QA rules applying to specified content elements and attributes

MathML length regex is defined in schema file common-types.xsd. Also uses values for "named-space".

assert

mml:*/@width|mml:*/@lspace|mml:*/@rspace|mml:*/@minsize|mml:*/@maxsize

matches(.,'^((-?([0-9]+|[0-9]*\.[0-9]+)*(em|ex|px|in|cm|mm|pt|pc|%))|0|veryverythinmathspace|verythinmathspace|thinmathspace|mediummathspace|thickmathspace|verythickmathspace|veryverythickmathspace)$')

nlm-core-rule-2

error

NLM-1-0002

JATS and BITS QA rules applying to specified content elements and attributes

@xlink:href must be non-empty.

assert

@xlink:href

normalize-space(string(.)) != ''

nlm-core-rule-35

error

NLM-1-0035

JATS and BITS QA rules applying to specified content elements and attributes

Checks that @xlink:href value includes file extension.

report

@xlink:href

( parent::*:supplementary-material or parent::*:inline-supplementary-material or parent::*:graphic or parent::*:inline-graphic or parent::*:media[not(@content-type='brightcove')]/parent::*:supplementary-material ) and not(//*:book-meta/*:custom-meta-group/*:custom-meta[*:meta-name/text() = 'is-proofing-stage']/*:meta-value/text()) and not( matches( ., '\.[^-_]{1,6}$' ) )

nlm-core-rule-202

error

JATS and BITS QA rules applying to specified content elements and attributes

Supplementary data filename is longer than SC depositor service can cope with.

report

@xlink:href

parent::*:supplementary-material and string-length() > 99 and not(//*:book-meta/*:custom-meta-group/*:custom-meta[*:meta-name/text() = 'is-proofing-stage']/*:meta-value/text())

nlm-core-rule-203

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Checks that @xlink:href and article-id values do not begin or end with a space character.

assert

*:article-id

@xlink:href

. = normalize-space(.)

nlm-core-rule-32

error

NLM-1-0032

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

BITS QA rules applying to specified content elements and attributes

Checks element has @id

assert

*:related-article

*:sec[parent::*:abstract]

*:corresp

*:supplementary-material[not(parent::*:issue-meta or parent::*:book-meta/parent::*:book-part-wrapper)]

*:ack

*:fn

mml:math

*:ref

*:ref-list

*:table-wrap

*:tex-math

*:ack

*:book-app

*:book-part

*:boxed-text

*:fig

*:fig-group

*:front-matter-part

*:index

*:index-group

*:ref-list

*:sec

exists(/comment()[matches(.,'Converted to\s+(SC|)BITS')]) or (exists(@id) and string(@id) ne '')

nlm-core-rule-119

error

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

JATS QA rules applying to specified content elements and attributes

Checks that element has a title. Exception: abstract with @abstract-type of "teaser".

assert

*:abstract

*:ack

*:ref-list

*:sec[parent::*:abstract]

child::*:title or (self::*:abstract and @abstract-type = 'teaser')

nlm-core-rule-302

error

JATS and BITS QA rules applying to specified content elements and attributes

alt-text element must have content that is not simply "null".

report

*:alt-text

empty(text()) or text() eq '' or lower-case(text()) eq 'null'

nlm-core-rule-323

error

JATS and BITS QA rules applying to specified content elements and attributes

alt-text element must be a child of graphic.

assert

*:alt-text

parent::*:graphic or parent::*:inline-graphic or parent::*:supplementary-material[@content-type eq 'affiliate-logo']

nlm-core-rule-21

error

NLM-1-0020

JATS and BITS QA rules applying to specified content elements and attributes

BITS QA rules applying to specified content elements and attributes

back and book-back elements may not have a title or label child.

report

*:back

*:book-back

child::*:title or child::*:label

nlm-core-rule-96

error

NLM-1-0100b

JATS and BITS QA rules applying to specified content elements and attributes

<inline-formula> and <disp-formula> must contain one of <tex-math notation="LaTeX"> or <mml:math>, but not both. They may contain graphics where the code is not available.

assert

*:disp-formula

*:inline-formula

(child::*:tex-math[@notation = 'LaTeX'] or child::mml:math or child::*:inline-graphic or child::*:graphic) and count(child::*[not(self::*:label)]) = 1 and count(child::*:label) le 1 and count(child::*:inline-graphic) le 1 and count(child::*:graphic) le 1

nlm-core-rule-98

error

JATS and BITS QA rules applying to specified content elements and attributes

The inline-formula and disp-formula elements may not contain other inline-formula and disp-formula elements.

report

*:disp-formula

*:inline-formula

descendant::*:inline-formula or descendant::*:disp-formula

nlm-core-rule-152

error

JATS and BITS QA rules applying to specified content elements and attributes

A figure. display formula or table-wrap element must not be a descendant of a paragraph element, unless it is part of a list or inside a footnote.

report

*:disp-formula

*:fig

*:table-wrap

ancestor::*:p and not( ancestor::*:statement or ancestor::*:list-item or ancestor::*:fn or ancestor::*:abstract )

nlm-core-rule-121

error

JATS and BITS QA rules applying to specified content elements and attributes

JATS QA rules applying to specified content elements and attributes

Flags if a deprecated element is used

report

*:element-citation

*:response

self::*

nlm-core-rule-36

error

NLM-1-0036

JATS and BITS QA rules applying to specified content elements and attributes

Checks ext-link elements have the correct value of @ext-link-type. This rule checks against the PoolParty controlled vocabulary 'ExternalLinkType'.

assert

*:ext-link

@ext-link-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'ExternalLinkType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-155

error

JATS and BITS QA rules applying to specified content elements and attributes

Check that @xlink:href starts "http://" or "https://" for particular values of @ext-link-type

report

*:ext-link

( @ext-link-type[ . = ('pmcid', 'pmid', 'uri') ] and not(matches(@xlink:href, '^https?://')) ) or ( @ext-link-type[ . = ('doi', 'orcid') ] and not(matches(@xlink:href, '^https://')) )

nlm-core-rule-173

warning

JATS and BITS QA rules applying to specified content elements and attributes

Checks for license element when book or journal article has a link to creativecommons.org

report

*:ext-link

*:uri

(starts-with(@xlink:href,'http://creativecommons.org') or starts-with(@xlink:href,'https://creativecommons.org')) and not( if (/*:article/*:front/*:article-meta/*:permissions/*:license[starts-with(@license-type,'cc-')]) then true() else false() or if (//*:book-meta/*:permissions/*:license[starts-with(@license-type,'cc-')]) then true() else false() )

nlm-core-rule-283

error

JATS and BITS QA rules applying to specified content elements and attributes

BITS QA rules applying to specified content elements and attributes

A link may not contain another link.

report

*:ext-link

*:uri

*:xref

*:related-object

descendant::*:ext-link or descendant::*:related-object or descendant::*:uri or descendant::*:xref

nlm-core-rule-321

error

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Checks that author-notes does not have a direct child p, as this may cause the text to display within the Extract in the issue TOC. The p should be within a fn or corresp element. Now checks fig as well.

report

*:author-notes

*:fig

.[child::*:p]

nlm-core-rule-38

error

NLM-1-0038

JATS and BITS QA rules applying to specified content elements and attributes

@symbol attribute should not be used (use label element instead).

report

*:fn

@symbol

nlm-core-rule-39

error

NLM-1-0039

JATS and BITS QA rules applying to specified content elements and attributes

Checks that table footnotes are in the table foot

report

*:fn

ancestor::*:table-wrap and not(parent::*:table-wrap-foot)

nlm-core-rule-130

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Flags if no xref or related-object is found which targets the aff, corresp, or fn element.

assert

*:aff

*:corresp

*:fn

@id = //*:xref/@rid or @id = //*:related-object/@object-id or self::*:fn[parent::*:table-wrap-foot] or self::*:aff[parent::*:contrib]

nlm-core-rule-139

error

JATS and BITS QA rules applying to specified content elements and attributes

Checks for presence of title "Footnotes" or "Endnotes" in fn-group.

assert

*:fn-group

child::*:title[. = 'Footnotes' or . = 'Endnotes' or . = 'Notes']

nlm-core-rule-194

warning

JATS and BITS QA rules applying to specified content elements and attributes

Checks for presence of title "Endnotes" in fn-group. This value may only be used with permission from OUP.

report

*:fn-group

child::*:title[ . = 'Endnotes']

nlm-core-rule-205

error

JATS and BITS QA rules applying to specified content elements and attributes

Parent of a fn-group element must be a back, ack, or toc element.

assert

*:fn-group

parent::*:back or parent::*:ack or parent::*:toc

nlm-core-rule-144

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Checks that file extension for supplementary material is on the allowed list. This rule checks against the PoolParty controlled vocabulary 'FileType'.

assert

*:supplementary-material[parent::*:issue-meta]

*:self-uri[not(parent::*:book-meta/parent::*:book-part-wrapper)]

*:supplementary-material[not(parent::*:issue-meta or parent::*:book-meta/parent::*:book-part-wrapper)]

*:graphic

*:inline-graphic

not(contains(@xlink:href,'.')) or ( ( self::*:supplementary-material and lower-case( replace(@xlink:href,'^.+\.([^\.]+)$','$1') ) = (document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'FileType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)][child::skos:broader[@rdf:resource = 'http://data.oup.com/taxonomy/FileType/1']]/skos:prefLabel/text(),document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'FileType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)][child::skos:broader[@rdf:resource = 'http://data.oup.com/taxonomy/FileType/23']]/skos:prefLabel/text()) ) or ( (self::*:graphic or self::*:inline-graphic) and lower-case( replace(@xlink:href,'^.+\.([^\.]+)$','$1') ) = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'FileType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)][child::skos:broader[@rdf:resource = 'http://data.oup.com/taxonomy/FileType/23']]/skos:prefLabel/text() ) or ( self::*:self-uri and lower-case( replace(@xlink:href,'^.+\.([^\.]+)$','$1') ) = 'pdf' ) )

nlm-core-rule-153

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

A file name for a PDF version of an article or a supplementary data file must not contain a space character.

report

*:supplementary-material[parent::*:issue-meta]

*:self-uri[not(parent::*:book-meta/parent::*:book-part-wrapper)]

*:supplementary-material[not(parent::*:issue-meta or parent::*:book-meta/parent::*:book-part-wrapper)]

*:graphic

*:inline-graphic

*:media

contains(@xlink:href,' ')

nlm-core-rule-169

fatal-error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Checks that files referenced exist on the filesystem.

report

*:supplementary-material[parent::*:issue-meta]

*:self-uri[not(parent::*:book-meta/parent::*:book-part-wrapper)]

*:supplementary-material[not(parent::*:issue-meta or parent::*:book-meta/parent::*:book-part-wrapper)]

*:graphic

*:inline-graphic

not( false() or //*:book-meta/*:custom-meta-group/*:custom-meta[*:meta-name/text() = 'is-proofing-stage']/*:meta-value/text() or oupfn:doc-available(concat('../Assets/', @xlink:href), base-uri()) or oupfn:doc-available(concat('Assets/', @xlink:href), base-uri()) or oupfn:doc-available(concat('assets/', @xlink:href), base-uri()) or oupfn:doc-available(concat('media/', @xlink:href), base-uri()) or oupfn:doc-available(concat('pdf/', @xlink:href), base-uri()) or oupfn:doc-available(concat('supplementary%20files/', @xlink:href), base-uri()) or oupfn:doc-available(concat('../issue_level_files/', @xlink:href), base-uri()) or oupfn:doc-available(concat('cover/', @xlink:href), base-uri()) or oupfn:doc-available(concat('chunked%20pdf/', @xlink:href), base-uri()) or oupfn:doc-available(concat('print%20pdf/', @xlink:href), base-uri()) or oupfn:doc-available(concat('print/', @xlink:href), base-uri()) or oupfn:doc-available(concat('figures/inline/', @xlink:href), base-uri()) or oupfn:doc-available(concat('q&a/', @xlink:href), base-uri()) or oupfn:doc-available(concat('ebook/', @xlink:href), base-uri()) or oupfn:doc-available(concat('MARC/', @xlink:href), base-uri()) or @xlink:href = tokenize(string(''),',\s*') )

nlm-core-rule-256

error

JATS and BITS QA rules applying to specified content elements and attributes

@mimetype attribute of graphic or inline-graphic must have value "image". This rule checks against the PoolParty controlled vocabulary 'MIMEType'.

assert

*:graphic

*:inline-graphic

@mimetype = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'MIMEType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)][child::skos:broader[@rdf:resource = 'http://data.oup.com/taxonomy/MIMEType/1']]/skos:prefLabel/text()

nlm-core-rule-294

error

JATS and BITS QA rules applying to specified content elements and attributes

Check that @xlink:href starts "https://" for links to Creative Commons

report

*:license[not(ancestor::fig)]

(starts-with(@xlink:href,'http://creativecommons.org') or starts-with(@xlink:href,'https://creativecommons.org')) and not(matches(@xlink:href, '^https://'))

nlm-core-rule-319

error

JATS and BITS QA rules applying to specified content elements and attributes

For a license element within an object such as a figure or table, checks the value of license type.

assert

*:license[ancestor::fig or ancestor::table-wrap or ancestor::graphic or ancestor::inline-graphic]

@license-type = (document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'LicenseType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text(),'restricted','NoElectronicRight')

nlm-core-rule-49

error

NLM-1-0048

JATS and BITS QA rules applying to specified content elements and attributes

Checks value of //list/@list-type. This rule checks against the PoolParty controlled vocabulary 'ListFormatType'.

assert

*:list

@list-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'ListFormatType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-271

error

JATS and BITS QA rules applying to specified content elements and attributes

A list element may not be a child of a p element.

report

*:list

parent::*:p and not(ancestor::*:statement) and not(ancestor::*:abstract) and not(ancestor::*:fn) and not(ancestor::*:caption)

nlm-core-rule-101

error

NLM-1-0104

JATS and BITS QA rules applying to specified content elements and attributes

<media content-type="brightcove"> must have parent <fig> with attribute @fig-type whose value is "audio", "video", "featured-audio" or "featured-video".

report

*:media

not(parent::*:supplementary-material) and (@content-type = 'brightcove' and not(parent::*:fig[@fig-type = 'audio' or @fig-type = 'video' or @fig-type = 'featured-audio' or @fig-type = 'featured-video']) )

nlm-core-rule-102

error

NLM-1-0105

JATS and BITS QA rules applying to specified content elements and attributes

<media> must contain two <object-id> elements, one for the referenceid and one for the videoid of the audio/video item.

report

*:media

@content-type = 'brightcove' and not( child::*:object-id[@pub-id-type = 'referenceid'] and child::*:object-id[@pub-id-type = 'videoid'] and count(child::*:object-id) = 2 )

nlm-core-rule-195

error

JATS and BITS QA rules applying to specified content elements and attributes

A video object-id/@referenceid must not contain /.

report

*:media

contains(*:object-id[@pub-id-type='referenceid'],'/')

nlm-core-rule-257

error

JATS and BITS QA rules applying to specified content elements and attributes

@mimetype attribute of media must have value "audio", "video", "model", or "text". This rule checks against the PoolParty controlled vocabulary 'MIMEType'.

assert

*:media

nlm-core-rule-112

error

JATS and BITS QA rules applying to specified content elements and attributes

mixed-citation element must have a non-empty value of @publication-type

assert

*:mixed-citation

@publication-type and @publication-type != ''

nlm-core-rule-178

error

JATS and BITS QA rules applying to specified content elements and attributes

Checks for empty elements in mixed-citation.

report

*:mixed-citation

child::*[count(child::*) = 0 and normalize-space(string(.)) = '' and not(self::inline-graphic)]

nlm-core-rule-272

error

JATS and BITS QA rules applying to specified content elements and attributes

A data citation or a software citation may not contain an article-title element.

report

*:mixed-citation

(@publication-type = ('data','software')) and child::*:article-title

nlm-core-rule-273

error

JATS and BITS QA rules applying to specified content elements and attributes

A data citation must contain a data-title element. A software citation must contain a part-title element.

report

*:mixed-citation

(@publication-type = 'data' and not(child::*:data-title)) or (@publication-type = 'software' and not(child::*:part-title))

nlm-core-rule-275

error

JATS and BITS QA rules applying to specified content elements and attributes

Checks that mixed-citation/@publication-type attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'BibliographicReferencePublicationType'.

assert

*:mixed-citation

@publication-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'BibliographicReferencePublicationType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-304

error

JATS and BITS QA rules applying to specified content elements and attributes

The name element may not be used in mixed-citation (we require string-name).

report

*:mixed-citation

child::*:name or child::*:person-group/*:name

nlm-core-rule-342

error

JATS and BITS QA rules applying to specified content elements and attributes

Checks for mixed-citation elements containing more than one edition element (which causes a Crossref deposit failure).

report

*:mixed-citation

exists(child::edition[2])

nlm-core-rule-315

error

JATS and BITS QA rules applying to specified content elements and attributes

Flags if a semantic MathML element is used

report

mml:csymbol

mml:set

self::*

nlm-core-rule-214

error

JATS and BITS QA rules applying to specified content elements and attributes

Checks that MathML has at least one non-empty text node.

assert

mml:math

descendant::text()[normalize-space() ne '']

nlm-core-rule-233

error

JATS and BITS QA rules applying to specified content elements and attributes

Checks that parent of mml:math and tex-math is disp-formula or inline-formula.

assert

mml:math

*:tex-math

parent::*:disp-formula or parent::*:inline-formula

nlm-core-rule-310

error

JATS and BITS QA rules applying to specified content elements and attributes

<m:math> must not contain deprecated @mode attribute.

report

mml:math

@mode

nlm-core-rule-311

error

JATS and BITS QA rules applying to specified content elements and attributes

<m:math> must not contain deprecated @other attribute.

report

mml:math

@other

nlm-core-rule-312

error

JATS and BITS QA rules applying to specified content elements and attributes

<m:math> must not contain deprecated @macros attribute.

report

mml:math

@macros

nlm-core-rule-8

error

NLM-1-0008

JATS and BITS QA rules applying to specified content elements and attributes

Certain elements (e.g. mml:mtext) shouldn't repeat as consecutive siblings. (Exception: when parent is mml:sup, mml:sub, or mml:subsup)

report

mml:mn

mml:mtext

not( parent::mml:msup or parent::mml:msub or parent::mml:msubsup or parent::mml:mfrac ) and ( name(.) = name(preceding-sibling::*[1]) )

nlm-core-rule-313

error

JATS and BITS QA rules applying to specified content elements and attributes

MathML mml:mtable element must contain mml:mtr.

assert

mml:mtable

child::mml:mtr

nlm-core-rule-314

error

JATS and BITS QA rules applying to specified content elements and attributes

MathML mml:mtr element must contain mml:mtd.

assert

mml:mtr

child::mml:mtd

nlm-core-rule-212

error

JATS and BITS QA rules applying to specified content elements and attributes

mml:none is only allowed as a child of mml:mmultiscripts.

assert

mml:none

parent::mml:mmultiscripts

nlm-core-rule-211

error

JATS and BITS QA rules applying to specified content elements and attributes

mml:semantics is only allowed as a child of mml:math.

assert

mml:semantics

parent::mml:math

nlm-core-rule-343

error

JATS and BITS QA rules applying to specified content elements and attributes

Checks MathML elements that require two or more child components such as a base and superscript for msup.

assert

mml:msup

mml:msub

mml:msubsup

mml:munder

mml:mover

mml:munderover

(if (self::*:msubsup or self::*:munderover) then exists(child::*[3]) else exists(child::*[2])) and not(child::*[normalize-space(string(.)) = ''])

nlm-core-rule-216

error

JATS and BITS QA rules applying to specified content elements and attributes

Checks that object-id/@pub-id-type attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'MediaObjectIDType'.

assert

*:object-id

@pub-id-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'MediaObjectIDType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-3

error

NLM-1-0003

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Certain elements may not contain only typographic formatting

assert

*:article-title

*:subtitle

*:p

*:title

not(doc-available('helpers/scout/Publishers.rdf')) or self::*:p[not( ancestor::*:caption or ancestor::*:abstract )] or self::*:subtitle[ ancestor::*[ self::*:citation or self::*:product or self::*:element-citation or self::*:mixed-citation or self::*:nlm-core-abstract-rule-citation ] ] or self::*:title[count(child::*) = 0 and normalize-space(string(.)) = ''] or child::text()[normalize-space(.) != ''] or child::*[ not( self::*:italic or self::*:bold or self::*:sc or self::*:sup or self::*:sub ) ] or child::*/child::node()[normalize-space() !=''] [position() = 1 or position() = last()] [self::*:xref]

nlm-core-rule-193

warning

JATS and BITS QA rules applying to specified content elements and attributes

GenBank mentioned with a call out.

report

*:p

parent::*:sec and (contains(lower-case(.), 'genbank') or contains(lower-case(.), 'gen bank')) and not(child::*:ext-link[@ext-link-type='gen'])

nlm-core-rule-249

error

JATS and BITS QA rules applying to specified content elements and attributes

Private use unicode range must no be used in the XML.

report

*:p

matches(., '\p{IsPrivate_Use}')

nlm-core-rule-289

error

JATS and BITS QA rules applying to specified content elements and attributes

External links starting www., http:// or https:// must be captured with an <ext-link> element.

report

*:p

descendant::text()[contains(lower-case(.), 'www.') or contains(lower-case(.), 'http://') or contains(lower-case(.), 'https://')][not(ancestor::*:ext-link)]

nlm-core-rule-255

error

JATS and BITS QA rules applying to specified content elements and attributes

One person-group element per role must be used.

report

*:person-group

./preceding-sibling::*:person-group[@person-group-type = ./@person-group-type]

nlm-core-rule-303

error

JATS and BITS QA rules applying to specified content elements and attributes

@person-group-type value must be one of those allowed in SCJATS and SCBITS.

assert

*:person-group

@person-group-type = ('author', 'editor', 'translator', 'curator')

nlm-core-rule-97

error

NLM-1-0101

JATS and BITS QA rules applying to specified content elements and attributes

<private-char> must be used only with express permission from OUP.

report

*:private-char

self::*:private-char

nlm-core-rule-269

error

JATS and BITS QA rules applying to specified content elements and attributes

Only one <mixed-citation> is permitted in <ref>

report

*:ref

*:mixed-citation[2]

nlm-core-rule-100

error

NLM-1-0103b

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

ArXiv ID validity check. An ArXiv ID starts with "arXiv:".

report

*:article-id

*:pub-id

*:ref

@pub-id-type = 'arxiv' and not( starts-with(., 'arXiv:') )

nlm-core-rule-341

error

JATS and BITS QA rules applying to specified content elements and attributes

Checks for references with dois where the prefix belongs to a known data repository. Flags an error if this is not captured with publication-type="data".

report

*:ref

child::*:mixed-citation[not(@publication-type='data')] and if (descendant::*:ext-link[contains(.,'10.5061') or contains(.,'10.24433') or contains(.,'10.6084') or contains(.,'10.7910') or contains(.,'10.5281')] or descendant::pub-id[contains(.,'10.5061') or contains(.,'10.24433') or contains(.,'10.6084') or contains(.,'10.7910') or contains(.,'10.5281')]) then 'yes' else 'no'='yes'

nlm-core-rule-10

error

NLM-1-0010

JATS and BITS QA rules applying to specified content elements and attributes

Small Caps should consist of normal sentence case

report

*:sc

matches(., '^[\s\p{Lu}]*$') or ( matches(., '^[\s\p{Ll}]*$') and matches(preceding-sibling::text()[1], '\p{Lu}$') )

nlm-core-rule-6

error

NLM-1-0006

JATS and BITS QA rules applying to specified content elements and attributes

Certain elements (e.g. sec) must have children other than 'title'

assert

*:sec

child::*[not(self::*:title)]

nlm-core-rule-175

error

JATS and BITS QA rules applying to specified content elements and attributes

string-name must not contain more than 1 surname or more than 1 given-names.

report

*:string-name

child::*:surname[2] or child::*:given-names[2]

nlm-core-rule-251

error

JATS and BITS QA rules applying to specified content elements and attributes

string-name containing <given-names> with no <surname>

report

*:string-name

*:given-names and not(*:surname)

nlm-core-rule-268

error

JATS and BITS QA rules applying to specified content elements and attributes

<suffix> element must not contain more than 10 characters (crossRef limitation).

report

*:suffix

string-length(.) > 10

nlm-core-rule-322

error

JATS and BITS QA rules applying to specified content elements and attributes

Checks that table elements do not have direct child tr elements, these should be child elements of a tbody or thead element.

report

*:table

.[child::*:tr]

bits-core-rule-105

error

JATS and BITS QA rules applying to specified content elements and attributes

Checks for table elements that use @content-type='multi-column' incorrectly, where they have a caption.

report

*:table

.[@content-type='multi-column' and preceding-sibling::caption]

nlm-core-rule-259

error

JATS and BITS QA rules applying to specified content elements and attributes

<tex-math> may not contain whitespace outside the $ delimiter.

assert

*:tex-math

string-length(.) = string-length(normalize-space(.))

nlm-core-rule-264

error

JATS and BITS QA rules applying to specified content elements and attributes

For inline math use a inline-formula element with a $ delimiter. For block math use a disp-formula element with a $$ delimiter.

assert

*:tex-math

starts-with(normalize-space(.),'$')

nlm-core-rule-301

warning

JATS and BITS QA rules applying to specified content elements and attributes

Checks content of <tex-math> element: if there is a '\textrm' tag containing an underscore, a warning is triggered to check if this is intended to produce subscript formatting.

report

*:tex-math

string()[matches(.,'.+textrm\{[\S]+_[\S]+\}.+')] or string()[matches(.,'.+textrm\{_[\S]+\}.+')]

nlm-core-rule-160

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

BITS QA rules applying to specified content elements and attributes

Certain elements (e.g. titles in abstracts, keywords, affiliations) should not end with punctuation or spaces.

assert

*:aff

*:degrees

*:kwd

*:title

*:label

self::*:title[not(parent::*:sec/ancestor::*:abstract)] or self::*:label[not(parent::*:sec or parent::*:title-group)] or not(matches(normalize-space(string()),'[,\.;:\-–—]$'))

nlm-core-rule-288

error

JATS and BITS QA rules applying to specified content elements and attributes

For table integrity, number of columns must be the same in all rows.

assert

*:tr

empty(preceding-sibling::*:tr) or oupfn:count-columns(.) = oupfn:count-columns(preceding-sibling::*:tr[1])

nlm-core-rule-23

error

NLM-1-0023

JATS and BITS QA rules applying to specified content elements and attributes

xref element must have @rid and @ref-type.

assert

*:xref

exists(@ref-type) and exists(@rid)

nlm-core-rule-25

error

NLM-1-0025

JATS and BITS QA rules applying to specified content elements and attributes

Checks that xref/@ref-type corresponds to name of target element.

assert

*:xref

<xsl:key name="ID" match="*[@id]" use="@id"/>

exists(/comment()[matches(.,'Converted to\s+(SC|)BITS')]) or ( @ref-type = 'fn' and key('ID',tokenize(@rid, ' ')[1])[self::*:fn[not(ancestor::*:table-wrap-foot)]] ) or ( @ref-type = 'table-fn' and key('ID',tokenize(@rid, ' ')[1])[self::*:fn[ancestor::*:table-wrap-foot]] ) or ( @ref-type = 'bibr' and key('ID',tokenize(@rid, ' ')[1])[self::*:ref] ) or ( @ref-type = 'aff' and key('ID',tokenize(@rid, ' ')[1])[self::*:aff] ) or ( @ref-type = 'corresp' and key('ID',tokenize(@rid, ' ')[1])[self::*:corresp] ) or ( @ref-type = 'app' and key('ID',tokenize(@rid, ' ')[1])[self::*:app] ) or ( @ref-type = 'boxed-text' and key('ID',tokenize(@rid, ' ')[1])[self::*:boxed-text] ) or ( @ref-type = 'disp-formula' and key('ID',tokenize(@rid, ' ')[1])[self::*:disp-formula] ) or ( @ref-type = 'fig' and key('ID',tokenize(@rid, ' ')[1])[self::*:fig] ) or ( @ref-type = 'table' and key('ID',tokenize(@rid, ' ')[1])[self::*:table or self::*:table-wrap] ) or ( @ref-type = 'sec' and key('ID',tokenize(@rid, ' ')[1])[self::*:sec] ) or ( @ref-type = 'supplementary-material' and key('ID',tokenize(@rid, ' ')[1])[self::*:supplementary-material] ) or ( @ref-type = 'glossary-term' and key('ID',tokenize(@rid, ' ')[1])[self::*:term] ) or ( @ref-type = 'other' )

nlm-core-rule-131

error

JATS and BITS QA rules applying to specified content elements and attributes

Flags if xref in a contributor has invalid @ref-type.

report

*:xref

parent::*:contrib and not( @ref-type = 'aff' or @ref-type = 'corresp' or @ref-type = 'fn' )

nlm-core-rule-221

warning

JATS and BITS QA rules applying to specified content elements and attributes

Warns if xref element ends with a comma.

report

*:xref

ends-with(normalize-space(string()),',')

nlm-core-rule-109

error

JATS QA rules applying to specified content elements and attributes

Citation ID must match the pattern [journal-id]-[article-id]-citation-\d+

assert

@id[parent::*:citation]

matches( ., concat( '^', /*:article/*:front/*:journal-meta/*:journal-id[@journal-id-type = 'publisher-id'], '-', /*:article/*:front/*:article-meta/*:article-id[@pub-id-type = 'publisher-id'], '-citation-\d+$' ) )

nlm-core-rule-184

error

JATS QA rules applying to specified content elements and attributes

Checks that @xlink:href value is not uppercase.

report

@xlink:href

(parent::*:graphic or parent::*:inline-graphic) and matches(.,'\p{Lu}')

nlm-core-rule-14

error

NLM-1-0014

JATS QA rules applying to specified content elements and attributes

Checks for presence of @article-type attribute

assert

*:article

@article-type and @article-type != ''

nlm-core-rule-15

error

NLM-1-0014

JATS QA rules applying to specified content elements and attributes

Checks for correct @article-type attribute when the article-meta contains a product

report

*:article

( child::*:front/*:article-meta/*:product and not( @article-type='book-review' or @article-type='product-review' ) )

nlm-core-rule-108

warning

JATS QA rules applying to specified content elements and attributes

Warning if article contains no email addresses.

assert

*:article

descendant::*:email

nlm-core-rule-115

error

NLM-1-0016

JATS QA rules applying to specified content elements and attributes

Checks article elements have the correct value of @article-type. This rule checks against the PoolParty controlled vocabulary 'ArticleType'.

assert

*:article

@article-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'ArticleType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-145

warning

JATS QA rules applying to specified content elements and attributes

Warning if content appears to indicate funding information but the details are not captured in the article-meta.

report

*:article

(descendant::*:sec|descendant::*:ack)/*:title[lower-case(.) = 'funding'] and not( child::*:front/*:article-meta/*:funding-group )

nlm-core-rule-147

error

JATS QA rules applying to specified content elements and attributes

PAP articles must not have volume or issue numbers.

report

*:article

if (/*:article/*:front/*:article-meta/*:custom-meta-group/*:custom-meta[ *:meta-name/text() = 'article-lifecycle' and *:meta-value/text() = 'PAP' ]) then true() else false() and ( child::*:front/*:article-meta/*:volume or child::*:front/*:article-meta/*:issue )

nlm-core-rule-191

warning

JATS QA rules applying to specified content elements and attributes

@article-type="other" needs to be questioned.

report

*:article

@article-type='other'

nlm-core-rule-209

error

JATS QA rules applying to specified content elements and attributes

A correction must have body text (not just an abstract).

report

*:article

@article-type = 'correction' and not(child::*:body) and not(child::*:front/*:article-meta/*:custom-meta-group/*:custom-meta/*:meta-value[. = 'accepted-manuscript'])

nlm-core-rule-247

error

JATS QA rules applying to specified content elements and attributes

Certain kinds of article must not contain a body element

report

*:article

( *:front/*:article-meta/*:article-categories/*:subj-group/*:subject[text() = 'InSight'] or @article-type = 'abstract' or *:front/*:article-meta/*:custom-meta-group/*:custom-meta/*:meta-value[text() = 'accepted-manuscript'] ) and child::*:body

nlm-core-rule-290

error

JATS QA rules applying to specified content elements and attributes

Article must have a page count. This does not apply to articles which have no body element.

report

*:article

descendant::*:body and not(descendant::*:counts/*:page-count)

nlm-core-rule-199

error

JATS QA rules applying to specified content elements and attributes

Oxford taxonomy subject not present.

assert

*:article-categories

count(child::*:subj-group[@subj-group-type='category-taxonomy-collection']/*:subject[starts-with(text(),'AcademicSubjects/')]) > 0

nlm-core-rule-293

error

JATS QA rules applying to specified content elements and attributes

<ext-link @ext-link-type='doi'> must not be used. In <mixed-citation> capture a DOI using <pub-id> with @pub-id-type='doi'.

report

*:ext-link

@ext-link-type='doi' or (parent::mixed-citation and @ext-link-type='uri' and matches(.,'http[s]?://doi.org'))

nlm-core-rule-196

error

JATS QA rules applying to specified content elements and attributes

3D model fig must have an object-id with @pub-id-type of doi

report

*:fig

@fig-type='model' and not(child::*:object-id[@pub-id-type='doi'])

nlm-core-rule-197

error

JATS QA rules applying to specified content elements and attributes

3D model fig must have an media with @content-type of sketchfab.

report

*:fig

@fig-type='model' and not(child::*:media[@content-type='sketchfab'])

nlm-core-rule-51

error

NLM-1-0050

JATS QA rules applying to specified content elements and attributes

Element 'list-item' should not have a 'label' child (unless the list type is "simple").

report

*:list-item

not(ancestor::*:list/@list-type = 'simple') and child::*:label

nlm-core-rule-305

error

JATS QA rules applying to specified content elements and attributes

For a journal article, the value of the link must begin 'https://players.brightcove.net/1611106596001/default_default/index.html?videoId=' followed by the Brightcove video id.

assert

*:media

starts-with(@xlink:href,'https://players.brightcove.net/1611106596001/default_default/index.html?videoId=')

nlm-core-rule-204

error

JATS QA rules applying to specified content elements and attributes

Parent of a notes element must be a back element.

assert

*:notes

parent::*:back

nlm-core-rule-121

error

JATS and BITS QA rules applying to specified content elements and attributes

JATS QA rules applying to specified content elements and attributes

Flags if a deprecated element is used

report

*:element-citation

*:response

self::*

nlm-core-rule-119

error

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

JATS QA rules applying to specified content elements and attributes

Checks that element has a title. Exception: abstract with @abstract-type of "teaser".

assert

*:abstract

*:ack

*:ref-list

*:sec[parent::*:abstract]

child::*:title or (self::*:abstract and @abstract-type = 'teaser')

nlm-core-rule-186

warning

JATS QA rules applying to specified content elements and attributes

Appendices must be captured in <app>.

report

*:sec[parent::*:abstract]

*:sec

parent::*:back and *:title[contains(lower-case(.), 'appendi')]

nlm-core-rule-238

error

JATS QA rules applying to specified content elements and attributes

Checks that Funding sec is not in supplementary material.

report

*:sec[parent::*:abstract]

*:sec

child::*:title[starts-with(., 'Supplementary')] and child::*:sec[child::*:title[(. = 'Funding') or (. = 'Financial Support')]]

nlm-core-rule-279

error

JATS QA rules applying to specified content elements and attributes

Report if sec with @sec-type="data-availability" is not a child of back.

report

*:sec[parent::*:abstract]

*:sec

@sec-type = 'data-availability' and not(parent::*:back)

nlm-core-rule-280

error

JATS QA rules applying to specified content elements and attributes

Report if sec with @sec-type="data-availability" has incorrect title.

report

*:sec[parent::*:abstract]

*:sec

@sec-type = 'data-availability' and not(lower-case(*:title/text()) eq 'data availability')

nlm-core-rule-132

error

JATS QA rules applying to specified content elements and attributes

Flags if xref in a contributor has a child node.

report

*:xref

parent::*:contrib and child::node()

nlm-core-rule-236

warning

JATS QA rules applying to specified content elements and attributes

Content of <xref> but be inside <sup>

report

*:xref

(parent::*:article-title and @ref-type[. = 'fn']) and not(child::*:sup)

nlm-core-rule-230

error

Journals JATS complex

Checking article issue-title against issue_meta

report

*:issue-title[not(tokenize(namespace-uri(/*),'/')[last()] = 'SCJATS-journalissue.xsd')][ if ( oupfn:doc-available('issue_meta.xml', base-uri())) then true() else false() ]

. != if (exists(if ( if ( oupfn:doc-available('issue_meta.xml', base-uri())) then true() else false() and doc-available(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else ''))) then document(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else '')) else ())) then (if ( if ( oupfn:doc-available('issue_meta.xml', base-uri())) then true() else false() and doc-available(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else ''))) then document(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else '')) else ()/*:issue-meta/*:issue-title) else ()

nlm-core-rule-20

error

NLM-1-0019

Journals JATS complex

JATS QA rules applying to article metadata only (not issue meta)

Checks valid types of pub-date

assert

*:pub-date[not(tokenize(namespace-uri(/*),'/')[last()] = 'SCJATS-journalissue.xsd')][ if ( oupfn:doc-available('issue_meta.xml', base-uri())) then true() else false() ]

*:pub-date[not(tokenize(namespace-uri(/*),'/')[last()] = 'SCJATS-journalissue.xsd')]

parent::*:issue-meta or ( @pub-type = 'epub' and count(../*:pub-date[@pub-type='epub']) = 1 and child::*:day and child::*:month ) or ( @pub-type='collection' and ../*:pub-date[@pub-type='epub'] and child::*:day and child::*:month ) or ( @pub-type = 'cover' and ../*:pub-date[@pub-type='epub'] )

nlm-core-rule-201

warning

Journals JATS complex

Checking article pub-date against issue_meta

report

*:pub-date[not(tokenize(namespace-uri(/*),'/')[last()] = 'SCJATS-journalissue.xsd')][ if ( oupfn:doc-available('issue_meta.xml', base-uri())) then true() else false() ]

exists(if ( if ( oupfn:doc-available('issue_meta.xml', base-uri())) then true() else false() and doc-available(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else ''))) then document(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else '')) else ()) and @iso-8601-date ne if ( if ( oupfn:doc-available('issue_meta.xml', base-uri())) then true() else false() and doc-available(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else ''))) then document(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else '')) else ()/*:issue-meta/*:pub-date[@pub-type=@pub-type]/@iso-8601-date

nlm-core-rule-337

error

Journals JATS complex

The subject TOC heading value in the article XML must match the toc-sec title value for the same article in the issue meta file.

report

*:subject[parent::subj-group[@subj-group-type='category-toc-heading']][not(tokenize(namespace-uri(/*),'/')[last()] = 'SCJATS-journalissue.xsd')][ if ( oupfn:doc-available('issue_meta.xml', base-uri())) then true() else false() ]

.[not(following-sibling::*:subj-group)] and not(./text()= if ( if ( oupfn:doc-available('issue_meta.xml', base-uri())) then true() else false() and doc-available(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else ''))) then document(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else '')) else ()/*:issue-meta/*:table-of-contents//*:title[following-sibling::*:toc-content[@xlink:href=/*:article/*:front/*:article-meta/*:article-id[@pub-id-type = 'doi']]])

nlm-core-rule-33

error

NLM-1-0033

JATS QA rules applying to metadata

Checks that the @xml:lang attribute on trans-abstract and trans-title are not the same language as the article. This rule assumes that no language declaration on the article implies the language is 'en'.

report

@xml:lang

( parent::*:trans-abstract[parent::*:article-meta] or parent::*:trans-title[not(ancestor::*:ref)] ) and ( oupfn:to-lower(string(.)) = oupfn:to-lower(if ((/*:article|/*:article/*:sub-article|/*:article/*:response)/@xml:lang) then string((/*:article|/*:article/*:sub-article|/*:article/*:response)/@xml:lang) else 'en') )

nlm-core-rule-170

warning

JATS QA rules applying to metadata

Warn if article abstract looks like it should be captured as a structured abstract.

report

*:abstract

child::*:p/child::node()[normalize-space() != ''][1] [self::*:bold] [descendant::text()[matches(.,'[\W]$')]]

nlm-core-rule-190

error

JATS QA rules applying to metadata

Teaser must not have a title.

report

*:abstract

@abstract-type='teaser' and *:title

nlm-core-rule-200

error

JATS QA rules applying to metadata

Abstract with abstract-type 'graphical', 'audio' or 'video' must have a <fig> element.

report

*:abstract

(@abstract-type='graphical' or @abstract-type='video' or @abstract-type='audio') and not(child::*:p[child::*:fig])

nlm-core-rule-262

error

JATS QA rules applying to metadata

Lay Summary must have title 'Lay Summary'

report

*:abstract

@specific-use='layperson' and not(*:title/text() = 'Lay Summary')

nlm-core-rule-263

error

JATS QA rules applying to metadata

Lay Summary must not contain graphic, inline-graphic or media.

report

*:abstract

@specific-use='layperson' and (descendant::*:graphic or descendant::*:inline-graphic or descendant::*:media)

nlm-core-rule-320

error

JATS QA rules applying to metadata

Checks value of @abstract-type for media, audio and graphical abstracts per JATS4R Abstracts recommendation.

report

*:abstract

(.[descendant::*:media[@mimetype='video'] and not(@abstract-type='video')]) or (.[descendant::*:media[@mimetype='audio'] and not(@abstract-type='audio')]) or (.[descendant::*:label='Graphical Abstract' and not(@abstract-type='graphical')])

nlm-core-rule-130

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Flags if no xref or related-object is found which targets the aff, corresp, or fn element.

assert

*:aff

*:corresp

*:fn

@id = //*:xref/@rid or @id = //*:related-object/@object-id or self::*:fn[parent::*:table-wrap-foot] or self::*:aff[parent::*:contrib]

nlm-core-rule-160

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

BITS QA rules applying to specified content elements and attributes

Certain elements (e.g. titles in abstracts, keywords, affiliations) should not end with punctuation or spaces.

assert

*:aff

*:degrees

*:kwd

*:title

*:label

self::*:title[not(parent::*:sec/ancestor::*:abstract)] or self::*:label[not(parent::*:sec or parent::*:title-group)] or not(matches(normalize-space(string()),'[,\.;:\-–—]$'))

nlm-core-rule-189

error

JATS QA rules applying to metadata

aff must not be repeated.

report

*:aff

. = preceding-sibling::*:aff

nlm-core-rule-100

error

NLM-1-0103b

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

ArXiv ID validity check. An ArXiv ID starts with "arXiv:".

report

*:article-id

*:pub-id

*:ref

@pub-id-type = 'arxiv' and not( starts-with(., 'arXiv:') )

nlm-core-rule-215

error

JATS QA rules applying to metadata

Checks that article-id/@pub-id-type attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'ArticleIDType'.

assert

*:article-id

@pub-id-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'ArticleIDType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-260

error

JATS QA rules applying to metadata

publisher-id must be longer than 4 characters.

report

*:article-id

@pub-id-type = 'publisher-id' and string-length(.) < 5

nlm-core-rule-203

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Checks that @xlink:href and article-id values do not begin or end with a space character.

assert

*:article-id

@xlink:href

. = normalize-space(.)

nlm-core-rule-292

error

JATS QA rules applying to metadata

<article-id pub-id-type="doi"> must begin with the correct prefix from the journals master list for each journal eISSN.

report

*:article-id

@pub-id-type='doi' and not(replace(text(), '^(\d*\.\d*/[^/]+/).*$', '$1') = document('helpers/journals-metadata/journals-master-list.xml')/jml:journals-master-list/jml:journal[jml:eissn/text() = string(if (local-name(/*) = 'article') then /*:article/*:front/*:journal-meta/*:issn[@pub-type='epub'] else /*:issue-meta/*:issue-identifier/*:issn[@pub-type = 'epub'])]/jml:doi-prefix)

nlm-core-rule-345

error

JATS QA rules applying to metadata

Checks that article DOI conforms to the standard format for OUP journal article DOIs

report

*:article-id

parent::*:article-meta and @pub-id-type='doi' and not(matches(text(), '^10.1093/[a-z]+/[a-z]+[\d]+[.]?[\d]*$'))

nlm-core-rule-18

error

NLM-1-0017

JATS QA rules applying to metadata

Checks article-meta has article-categories child.

assert

*:article-meta

child::*:article-categories

nlm-core-rule-19

error

NLM-1-0018

JATS QA rules applying to metadata

Checks for fpage or elocation-id child of article-meta

assert

*:article-meta

child::*:fpage or child::*:elocation-id

nlm-core-rule-72

error

NLM-1-0076

JATS QA rules applying to metadata

Article must have an article-id element with @pub-id-type="doi"

assert

*:article-meta

child::*:article-id[@pub-id-type='doi']

nlm-core-rule-85

error

NLM-1-0090

JATS QA rules applying to metadata

Article (that is not a PAP article) must contain volume and issue elements in article metadata.

assert

*:article-meta

nlm-core-rule-86

error

NLM-1-0091

JATS QA rules applying to metadata

Article (that is not a PAP article) must have a print or collection publication date (but not both). A PAP article must have neither a print nor a collection publication date.

assert

*:article-meta

( if (/*:article/*:front/*:article-meta/*:custom-meta-group/*:custom-meta[ *:meta-name/text() = 'article-lifecycle' and *:meta-value/text() = 'PAP' ]) then true() else false() and not( child::*:pub-date[@pub-type='ppub'] or child::*:pub-date[@pub-type='collection'] ) ) or ( not(if (/*:article/*:front/*:article-meta/*:custom-meta-group/*:custom-meta[ *:meta-name/text() = 'article-lifecycle' and *:meta-value/text() = 'PAP' ]) then true() else false()) and child::*:pub-date[@pub-type='ppub' or @pub-type='collection'] and not( child::*:pub-date[@pub-type='ppub'] and child::*:pub-date[@pub-type='collection'] ) )

nlm-core-rule-87

error

NLM-1-0092

JATS QA rules applying to metadata

Article must have an electronic publication date.

assert

*:article-meta

child::*:pub-date[@pub-type='epub']

nlm-core-rule-148

warning

JATS QA rules applying to metadata

Article metadata should contain a <self-uri> element containing a link to the PDF version of the article. (Archive content may sometimes be excepted from this rule.)

report

*:article-meta

not(child::*:self-uri)

nlm-core-rule-149

error

JATS QA rules applying to metadata

Article metadata should contain one <self-uri> element with a link to the PDF version of the article.

report

*:article-meta

count(child::*:self-uri) > 1

nlm-core-rule-150

error

JATS QA rules applying to metadata

Article must have an article-id element with @pub-id-type="publisher-id"

assert

*:article-meta

child::*:article-id[@pub-id-type='publisher-id']

nlm-core-rule-163

warning

JATS QA rules applying to metadata

Articles where the @article-type is addendum, article-commentary, correction, reply, or retraction should have a related-article element in the article metadata.

report

*:article-meta

/*/@article-type[ . = 'addendum' or . = 'article-commentary' or . = 'correction' or . = 'reply' or . = 'retraction' ] and not( child::*:related-article )

nlm-core-rule-165

error

JATS QA rules applying to metadata

Warn if collection date is missing from Continuous Publication or Online Only journal (see also rule nlm-core-rule-156).

report

*:article-meta

if (document('helpers/journals-with-no-ppub-date.xml')/ss:Workbook/ss:Worksheet[1]/ss:Table[1]/ss:Row[not(@ss:Hidden)]/ss:Cell[1]/ss:Data/text() = /*:article/*:front/*:journal-meta/*:journal-id[@journal-id-type = 'publisher-id']) then true() else false() and not(child::*:pub-date[@pub-type = 'collection'] or descendant::*:custom-meta[child::*:meta-value ='PAP'])

nlm-core-rule-185

error

JATS QA rules applying to metadata

elocation-id should be the OUP article ID (the same as the end of the DOI)

report

*:article-meta

not(if (local-name(/*) = 'article') then /*:article/*:front/*:journal-meta/*:issn[@pub-type='epub'] else /*:issue-meta/*:issue-identifier/*:issn[@pub-type = 'epub']='2050-3911') and *:elocation-id and not(*:elocation-id/text()=/*:article/*:front/*:article-meta/*:article-id[@pub-id-type = 'publisher-id']/text())

nlm-core-rule-188

warning

JATS QA rules applying to metadata

PDF filename must match publisher-id.

report

*:article-meta

substring-before(*:self-uri/@xlink:href,'.pdf')[1] != *:article-id[@pub-id-type='publisher-id']

nlm-core-rule-231

error

JATS QA rules applying to metadata

Checks that article-meta contains permissions.

assert

*:article-meta

child::*:permissions

nlm-core-rule-239

warning

JATS QA rules applying to metadata

Checks for multiple featured content.

report

*:article-meta

child::*:supplementary-material[starts-with(@content-type, 'featured')][2]

nlm-core-rule-287

error

JATS QA rules applying to metadata

Page count must be an integer. Letters and decimal points are not permitted.

report

*:article-meta

child::*:counts/*:page-count[matches(@count,'\D')]

nlm-core-rule-3

error

NLM-1-0003

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Certain elements may not contain only typographic formatting

assert

*:article-title

*:subtitle

*:p

*:title

nlm-core-rule-166

warning

JATS QA rules applying to metadata

Warn if article title does not end in a word character or expected punctuation: ' " ” ’ . ! ? ) ].

report

*:article-title

ancestor::*:article-meta and not( child::node() [not(descendant-or-self::*:xref)] [last()] [matches(string(),'[\w\?\)\.\]!''"”’]$')])

nlm-core-rule-176

error

JATS QA rules applying to metadata

collab must not contain certain strings.

report

*:collab

contains(lower-case(.), 'on behalf of') or contains(lower-case(.), 'document reviewers')

nlm-core-rule-207

error

JATS QA rules applying to metadata

The content of the collab element must be a text node optionally followed by contrib-group elements.

assert

*:collab

child::node()[1][self::text()[normalize-space() ne '']] and ( count(child::node()) = 1 or child::node()[position() != 1][normalize-space() ne ''][self::*:contrib-group] )

nlm-core-rule-77

error

NLM-1-0082

JATS QA rules applying to metadata

Checks that email is present for corresponding author

report

*:contrib

( @corresp = 'yes' and not(descendant::*:email) )

nlm-core-rule-140

error

JATS QA rules applying to metadata

Checks that no more than one email is present per contrib

report

*:contrib

count(child::*:email) > 1

nlm-core-rule-182

error

JATS QA rules applying to metadata

Checks role elements have the correct value. This rule checks against the PoolParty controlled vocabulary 'ContributorRole'.

report

*:contrib

@contrib-type = 'editor' and not(child::*:role[text() = ( 'Associate Editor', 'Conference Editor', 'Corresponding Editor', 'Decision Editor', 'Editor', 'Editor-in-Chief', 'Guest Editor', 'Handling Editor', 'Managing Editor', 'Section Editor', 'Special Issue Editor', 'Subject Editor' )])

nlm-core-rule-244

error

JATS QA rules applying to metadata

Contributors should not have more than one xref with @ref-type='corresp'.

report

*:contrib

*:xref[@ref-type ='corresp'][2]

nlm-core-rule-282

error

JATS QA rules applying to metadata

The @corresp attribute may only be used on individual authors, not on collaboration groups.

report

*:contrib

@corresp and child::*:collab

nlm-core-rule-286

error

JATS QA rules applying to metadata

A contrib element may contain only one name child element.

report

*:contrib

count(child::*:name) > 1

nlm-core-rule-327

error

JATS QA rules applying to metadata

contrib in sub-article/front-stub must have @contrib-type="author".

report

*:contrib

ancestor::*:sub-article and not(@contrib-type eq 'author')

nlm-core-rule-328

error

JATS QA rules applying to metadata

contrib in sub-article/front-stub must have role/@specific-use with a valid value. This rule checks against the PoolParty controlled vocabulary 'PeerReviewContributorRoleSpecificUse'.

report

*:contrib

ancestor::*:sub-article and not(child::*:role/@specific-use = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'PeerReviewContributorRoleSpecificUse.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text())

nlm-core-rule-336

error

JATS QA rules applying to metadata

A contrib may have one or more CRediT roles OR a non CRediT-role, not both.

report

*:contrib

.[role[@vocab='credit'] and role[not(@vocab)]]

nlm-core-rule-138

error

JATS QA rules applying to metadata

Checks for correct structure for use of custom-meta.

assert

*:custom-meta

( child::*:meta-name[. = 'edited-state'] and child::*:meta-value[ . = 'accepted-manuscript' or . = 'corrected-proof' ] ) or ( child::*:meta-name[. = 'article-lifecycle'] and child::*:meta-value[. = 'PAP'] ) or child::*:meta-name[. = 'open-science-badges'] or child::*:meta-name[. = 'peer-review-revision-round']

nlm-core-rule-237

error

JATS QA rules applying to metadata

Checks that open science badge meta-value has valid value. This rule checks against the PoolParty controlled vocabulary 'OpenScienceBadge'.

report

*:custom-meta

*:meta-name = 'open-science-badges' and not(*:meta-value = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'OpenScienceBadge.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text())

nlm-core-rule-17

error

NLM-1-0016

JATS QA rules applying to metadata

Checks date elements have the correct value of @date-type. This rule checks against the PoolParty controlled vocabulary 'PubStatus'.

assert

*:date

parent::*:event or @date-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'PubStatus.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-107

error

JATS QA rules applying to metadata

Checks that email element has content that looks like a valid email address and only contains one address.

assert

*:email

matches( ., '^[\w\-\+\.''_]*@[\w\-\._]+\.[\w]+$' )

nlm-core-rule-331

error

JATS QA rules applying to metadata

event/@event-type value must be a valid value. This rule checks against the PoolParty controlled vocabulary 'PeerReviewEventType'.

assert

*:event

@event-type = ('reviewer-report-received','author-comment-received','editor-decision-sent')

nlm-core-rule-158

error

JATS QA rules applying to metadata

Each funding source in an article that is not OA must contain a 'release-delay' processing instruction.

report

*:funding-source

(not( if (/*:article/*:front/*:article-meta/*:permissions/*:license[starts-with(@license-type,'cc-')]) then true() else false() ) or if (/*:article/*:front/*:article-meta/*:permissions/*:license[@license-type='us-gov']) then true() else false() ) and not(child::processing-instruction('release-delay')[string() = '12|0' or string() = '0|0'])

nlm-core-rule-168

warning

JATS QA rules applying to metadata

Warn if contributor name includes upper-case letter and full stop or two upper-case letters without a separator. (Initials must be separated by a space only.)

report

*:given-names

parent::*:name[parent::*:contrib] and matches(string(),'\p{Lu}[\.\p{Lu}]')

nlm-core-rule-277

warning

JATS QA rules applying to metadata

Check given-names capture and move any surname prefixes to surname.

report

*:given-names

ends-with(lower-case(.), ' del') or ends-with(lower-case(.), ' von') or ends-with(lower-case(.), ' von der') or ends-with(lower-case(.), ' de') or ends-with(lower-case(.), ' el') or ends-with(lower-case(.), ' van') or ends-with(lower-case(.), ' van der') or ends-with(lower-case(.), ' de la') or ends-with(lower-case(.), ' du') or ends-with(lower-case(.), ' da') or ends-with(lower-case(.), ' ten') or ends-with(lower-case(.), ' ter') or ends-with(lower-case(.), ' den') or ends-with(lower-case(.), ' van den') or ends-with(lower-case(.), ' dos') or ends-with(lower-case(.), ' van de') or ends-with(lower-case(.), ' von de')

nlm-core-rule-44

error

NLM-1-0044

JATS QA rules applying to metadata

Checks ISSN format

report

*:issn

ancestor::*:journal-meta and not( oupfn:is-valid-issn(.) )

nlm-core-rule-45

error

NLM-1-0045

JATS QA rules applying to metadata

Checks presence of @pub-type on issn element

assert

*:issn

@pub-type and @pub-type != ''

nlm-core-rule-46

error

NLM-1-0045

JATS QA rules applying to metadata

Checks that @pub-type on issn element (not in a citation) has valid value.

report

*:issn

( not( ancestor::*:citation or ancestor::*:nlm-citation or ancestor::*:mixed-citation or ancestor::*:element-citation or ancestor::*:product ) and not(@pub-type='ppub' or @pub-type='epub') )

nlm-core-rule-78

error

NLM-1-0083

JATS QA rules applying to metadata

Checks that there are no spaces in issue or volume elements

report

*:issue

*:volume

parent::*:article-meta and matches(., '\s')

nlm-core-rule-91

error

NLM-1-0095

JATS QA rules applying to metadata

Checks format of issue value.

report

*:issue

parent::*:article-meta and ( string() = '0' or not( ( @content-type = 'empty' and string() = '' ) or matches(., '^\d+$') or matches(., '^\d+(\-|–)\d+$') or matches(., '^Supplement_[a-zA-Z\d]+$') or matches(., '^\d+_Part_\d+$') or (/*:article/*:front/*:journal-meta/*:journal-id[@journal-id-type = 'publisher-id']='nar' and (matches(., 'D1') or matches(., 'W1'))) or (/*:article/*:front/*:journal-meta/*:journal-id[@journal-id-type = 'publisher-id']='hmg' and (matches(., 'R1') or matches(., 'R2'))) ) )

nlm-core-rule-128

error

JATS QA rules applying to metadata

Checks that @content-type="empty" is used for empty volume and issue elements.

report

*:issue

*:volume

( . = '' and not( @content-type = 'empty' ) )

nlm-core-rule-234

error

JATS QA rules applying to metadata

Checks for deprecated attribute @content-type="supplement".

report

*:issue

@content-type = 'supplement'

nlm-core-rule-174

error

JATS QA rules applying to metadata

Checks for a br in issue-title

report

*:issue-title

parent::*:article-meta and child::*:br

nlm-core-rule-278

error

JATS QA rules applying to metadata

Checking article issue-title against issue_meta

report

*:issue-sponsor

. != if (exists(if ( if ( oupfn:doc-available('issue_meta.xml', base-uri())) then true() else false() and doc-available(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else ''))) then document(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else '')) else ()/*:issue-meta/*:issue-sponsor)) then (if ( if ( oupfn:doc-available('issue_meta.xml', base-uri())) then true() else false() and doc-available(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else ''))) then document(resolve-uri('issue_meta.xml', if (exists(base-uri())) then base-uri() else '')) else ()/*:issue-meta/*:issue-sponsor) else ''

nlm-core-rule-47

error

NLM-1-0046

JATS QA rules applying to metadata

Checks that @journal-id-type attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'JournalIDType'.

assert

*:journal-id[parent::*:journal-meta]

@journal-id-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'JournalIDType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-71

error

NLM-1-0075

JATS QA rules applying to metadata

Article must have an electronic ISSN.

assert

*:journal-meta

child::*:issn[@pub-type='epub']

nlm-core-rule-83

error

NLM-1-0088

JATS QA rules applying to metadata

Checks for existence of OUP product code in journal metadata

assert

*:journal-meta

child::*:journal-id[@journal-id-type='publisher-id']

nlm-core-rule-106

error

JATS QA rules applying to metadata

<journal-id journal-id-type="publisher-id"> must match the corresponding code in the journals master list for each journal eISSN.

assert

*:journal-meta

child::*:journal-id[@journal-id-type='publisher-id'] = document('helpers/journals-metadata/journals-master-list.xml')/jml:journals-master-list/jml:journal[jml:eissn/text() = string(if (local-name(/*) = 'article') then /*:article/*:front/*:journal-meta/*:issn[@pub-type='epub'] else /*:issue-meta/*:issue-identifier/*:issn[@pub-type = 'epub'])]/jml:oup_code

nlm-core-rule-48

error

NLM-1-0047

JATS QA rules applying to metadata

Checks that journal-meta has journal-title

assert

*:journal-title-group

child::*:journal-title

nlm-core-rule-338

error

JATS QA rules applying to metadata

Element <name-alternatives> should only be used where the contributor has two names.

assert

*:name-alternatives

exists(child::*:name[2]) or (exists(child::*:name) and exists(child::*:string-name))

nlm-core-rule-339

error

JATS QA rules applying to metadata

<string-name> in <name-alternatives> should not contain <given-names> or <surname>.

report

*:string-name[parent::*:name-alternatives]

exists(child::*:given-names) or exists(child::*:surname)

nlm-core-rule-181

error

JATS QA rules applying to metadata

Checks permissions (at article level) has license child.

report

*:permissions[not(ancestor::fig or ancestor::table-wrap or ancestor::graphic or ancestor::inline-graphic)]

parent::*:article-meta and not(child::*:license)

nlm-core-rule-232

error

JATS QA rules applying to metadata

Checks that permissions contains copyright-year and copyright-statement. (JATS4R recommends also including copyright-holder.)

assert

*:permissions[not(ancestor::fig or ancestor::table-wrap or ancestor::graphic or ancestor::inline-graphic)]

child::*:copyright-year and child::*:copyright-statement

nlm-core-rule-114

content-warning

JATS QA rules applying to metadata

Online publication date is expected to be less than a month in the future.

report

*:pub-date

(if (exists(@iso-8601-date)) then (string(@iso-8601-date)) else oupfn:getISO8601date(*:year/text(), *:month/text(), *:day/text()) castable as xs:date) and @pub-type = 'epub' and ( days-from-duration( xs:date(if (exists(@iso-8601-date)) then (string(@iso-8601-date)) else oupfn:getISO8601date(*:year/text(), *:month/text(), *:day/text())) - current-date() ) > 31 )

nlm-core-rule-156

error

JATS QA rules applying to metadata

Warn if ppub date found in Continuous Publication or Online Only journal.

report

*:pub-date

nlm-core-rule-220

error

JATS QA rules applying to metadata

Checks that pub-date/@pub-type attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'JournalPubDateType'.

assert

*:pub-date

@pub-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'JournalPubDateType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text() or exists(@publication-format)

nlm-core-rule-276

error

JATS QA rules applying to metadata

Check cover date month element for incorrectly captured values such as 'spring', 'summer'.

report

*:pub-date

@pub-type = 'cover' and child::*:month[ contains(lower-case(.),'spring') or contains(lower-case(.),'summer') or contains(lower-case(.),'fall') or contains(lower-case(.),'autumn') or contains(lower-case(.),'winter')]

nlm-core-rule-281

error

JATS QA rules applying to metadata

Element pub-date where @pub-type="cover" must have a valid @iso-8601-date attribute.

report

*:pub-date

parent::*:issue-meta and @pub-type = 'cover' and ( not(@iso-8601-date) or not( oupfn:is-valid-ISO8601-date(@iso-8601-date) ) )

nlm-core-rule-340

error

JATS QA rules applying to metadata

Element pub-date where @pub-type="cover" must not have an @iso-8601-date attribute when present in the article xml. This is only required in issue-meta.

report

*:pub-date

parent::*:article-meta and @pub-type = 'cover' and exists(@iso-8601-date)

nlm-core-rule-16

error

NLM-1-0015

JATS QA rules applying to metadata

Check @related-article-type is allowed value and corresponds correctly to @article-type

assert

*:related-article

( ( @related-article-type='commentary' and ( /*:article/@article-type='editorial' or /*:article/@article-type='letter' or /*:article/@article-type='discussion' or /*:article/@article-type='article-commentary' ) ) or @related-article-type='companion' or ( @related-article-type='corrected-article' and /*:article/@article-type='correction' ) or ( @related-article-type='letter' and /*:article/@article-type='reply' ) or ( @related-article-type='retracted-article' and /*:article/@article-type='retraction' ) or ( @related-article-type='object-of-concern' and /*:article/@article-type='expression-of-concern' ) or ( @related-article-type='addendum' and /*:article/@article-type='addendum' ) or @related-article-type='update-to-article' )

nlm-core-rule-32

error

NLM-1-0032

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

BITS QA rules applying to specified content elements and attributes

Checks element has @id

assert

*:related-article

*:sec[parent::*:abstract]

*:corresp

*:supplementary-material[not(parent::*:issue-meta or parent::*:book-meta/parent::*:book-part-wrapper)]

*:ack

*:fn

mml:math

*:ref

*:ref-list

*:table-wrap

*:tex-math

*:ack

*:book-app

*:book-part

*:boxed-text

*:fig

*:fig-group

*:front-matter-part

*:index

*:index-group

*:ref-list

*:sec

exists(/comment()[matches(.,'Converted to\s+(SC|)BITS')]) or (exists(@id) and string(@id) ne '')

nlm-core-rule-52

error

NLM-1-0051

JATS QA rules applying to metadata

Checks for required attributes of <related-article>.

assert

*:related-article

( @ext-link-type='doi' and @related-article-type and @xlink:href )

nlm-core-rule-177

error

JATS QA rules applying to metadata

Checks for related-article in article-meta if there is one in body.

report

*:related-article

ancestor::*:body and not(//*:related-article[parent::*:article-meta])

nlm-core-rule-229

error

JATS QA rules applying to metadata

Warns if related-article DOI target matches the DOI of the parent article.

report

*:related-article

@xlink:href = /*:article/*:front/*:article-meta/*:article-id[@pub-id-type = 'doi']/text()

nlm-core-rule-296

error

JATS QA rules applying to metadata

CRediT taxonomy can only be used for contributors with @contrib-type of "author".

report

*:role

@vocab='credit' and not(parent::*:contrib/@contrib-type='author')

nlm-core-rule-297

error

JATS QA rules applying to metadata

Credit role must match CRediT taxonomy.

report

*:role

@vocab='credit' and not(document('helpers/scout/CRediT_Terms.rdf')/rdf:RDF/rdf:Description[skos:prefLabel=@vocab-term] and @vocab-term-identifier=document('helpers/scout/CRediT_Terms.rdf')/rdf:RDF/rdf:Description[skos:prefLabel=@vocab-term]/@rdf:about)

nlm-core-rule-298

error

JATS QA rules applying to metadata

@degree-contribution values must match the taxonomy.

report

*:role

exists(@degree-contribution) and not(document('helpers/scout/CRediT_Degrees.rdf')/rdf:RDF/rdf:Description[skos:prefLabel=@degree-contribution])

nlm-core-rule-299

error

JATS QA rules applying to metadata

Credit role @vocab-term must match text of role.

report

*:role

@vocab='credit' and (@vocab-term != .)

nlm-core-rule-93

error

NLM-1-0097

JATS QA rules applying to metadata

season element is only allowed as part of a cover date.

assert

*:season

parent::*:pub-date[@pub-type='cover']

nlm-core-rule-325

error

JATS QA rules applying to metadata

sub-article/@article-type value must be a valid value. This rule checks against the PoolParty controlled vocabulary 'SubarticleType'.

assert

*:sub-article

@article-type = ('author-comment','editor-report','reviewer-report')

nlm-core-rule-326

error

JATS QA rules applying to metadata

sub-article/front-stub must contain a DOI.

assert

*:sub-article

exists(child::*:front-stub/*:article-id[@pub-id-type eq 'doi'])

nlm-core-rule-329

error

JATS QA rules applying to metadata

sub-article/front-stub must contain a title.

assert

*:sub-article

exists(child::*:front-stub/*:title-group/*:article-title)

nlm-core-rule-330

error

JATS QA rules applying to metadata

sub-article/front-stub must contain an event date.

assert

*:sub-article

exists(child::*:front-stub/*:pub-history/*:event/*:date)

nlm-core-rule-332

error

JATS QA rules applying to metadata

sub-article/front-stub must contain a revision round.

assert

*:sub-article

exists(child::*:front-stub/*:custom-meta-group/*:custom-meta/*:meta-name[text() eq 'peer-review-revision-round'])

nlm-core-rule-333

error

JATS QA rules applying to metadata

sub-article/front-stub must contain a valid revision round value.

assert

*:sub-article

exists(child::*:front-stub/*:custom-meta-group/*:custom-meta[*:meta-name/text() eq 'peer-review-revision-round']/*:meta-value/text()) and child::*:front-stub/*:custom-meta-group/*:custom-meta[*:meta-name/text() eq 'peer-review-revision-round']/*:meta-value/text() castable as xs:integer and number(child::*:front-stub/*:custom-meta-group/*:custom-meta[*:meta-name/text() eq 'peer-review-revision-round']/*:meta-value/text()) ge 0

nlm-core-rule-334

error

JATS QA rules applying to metadata

sub-article/front-stub must contain a self-uri.

assert

*:sub-article

exists(child::*:front-stub/*:self-uri)

nlm-core-rule-116

error

JATS QA rules applying to metadata

BITS QA rules applying to book and book-part metadata

Checks that subject collection code is present in applicable taxonomy.

assert

*:subject[parent::*:subj-group[@subj-group-type='category-taxonomy-collection'] ]

(if (document('helpers/jrn_taxonomy_lookup.xml')/taxonomyLookup/journal[ISSN = /*:article/*:front/*:journal-meta/*:issn[@pub-type='ppub'] or eISSN = if (local-name(/*) = 'article') then /*:article/*:front/*:journal-meta/*:issn[@pub-type='epub'] else /*:issue-meta/*:issue-identifier/*:issn[@pub-type = 'epub']]/taxonomy-name/text()) then ( for $jtn in document('helpers/jrn_taxonomy_lookup.xml')/taxonomyLookup/journal[ISSN = /*:article/*:front/*:journal-meta/*:issn[@pub-type='ppub'] or eISSN = if (local-name(/*) = 'article') then /*:article/*:front/*:journal-meta/*:issn[@pub-type='epub'] else /*:issue-meta/*:issue-identifier/*:issn[@pub-type = 'epub']]/taxonomy-name/text() return document( concat('helpers/journals-taxonomies/',$jtn,'.rdf'))/rdf:RDF ) else NULL,document(concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ), 'AcademicSubjects.rdf'))/rdf:RDF,document(concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ), 'Series.rdf'))/rdf:RDF,document(concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ), 'disorders.rdf'))/rdf:RDF,document(concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ), 'LanguageLevelCEFR.rdf'))/rdf:RDF,document(concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ), 'EducationalSector.rdf'))/rdf:RDF,document(concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ), 'EducationLearningConcept.rdf'))/rdf:RDF,document(concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ), 'Genre.rdf'))/rdf:RDF,document(concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ), 'Purpose.rdf'))/rdf:RDF)/rdf:Description[ matches( @rdf:about, concat('/',./text(),'$') ) ]

nlm-core-rule-118

error

JATS QA rules applying to metadata

BITS QA rules applying to book and book-part metadata

Checks that subject collection code includes name of applicable taxonomy.

assert

*:subject[parent::*:subj-group[@subj-group-type='category-taxonomy-collection'] ]

(document('helpers/jrn_taxonomy_lookup.xml')/taxonomyLookup/journal[ISSN = /*:article/*:front/*:journal-meta/*:issn[@pub-type='ppub'] or eISSN = if (local-name(/*) = 'article') then /*:article/*:front/*:journal-meta/*:issn[@pub-type='epub'] else /*:issue-meta/*:issue-identifier/*:issn[@pub-type = 'epub']]/taxonomy-name/text()='Biology_Methods_and_Protocols' and tokenize(text(),'/')[1]='BiologyMethodsandProtocols') or tokenize(text(),'/')[1] = document('helpers/jrn_taxonomy_lookup.xml')/taxonomyLookup/journal[ISSN = /*:article/*:front/*:journal-meta/*:issn[@pub-type='ppub'] or eISSN = if (local-name(/*) = 'article') then /*:article/*:front/*:journal-meta/*:issn[@pub-type='epub'] else /*:issue-meta/*:issue-identifier/*:issn[@pub-type = 'epub']]/taxonomy-name/text() or tokenize(text(),'/')[1] = ('AcademicSubjects','disorders','Series','LanguageLevelCEFR','EducationalSectorISCED','EducationLearningConcept','Genre','Purpose')

nlm-core-rule-126

error

JATS QA rules applying to metadata

Checks subject element representing a series title has a valid value. This rule checks against the PoolParty controlled vocabulary 'SeriesCategory'.

assert

*:subject[parent::*:subj-group[@subj-group-type='category-oup-series'] ]

. = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'SeriesCategory.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-171

error

JATS QA rules applying to metadata

<subject> element of <subj-group subj-group-type="category-toc-heading"> must not exceed 255 characters.

report

*:subject[parent::*:subj-group[@subj-group-type='category-toc-heading'] ]

string-length() > 255

nlm-core-rule-192

warning

JATS QA rules applying to metadata

@article-type="correction" for corrections, corrigenda and errata.

report

*:subject[parent::*:subj-group[@subj-group-type='category-toc-heading'] ]

(starts-with(lower-case(.), 'correction') or starts-with(lower-case(.), 'corrigend') or starts-with(lower-case(.), 'errat')) and /*:article/@article-type!='correction'

nlm-core-rule-56

error

NLM-1-0057

JATS QA rules applying to metadata

subj-group[@subj-group-type="category-toc-heading"] may have at most one child subject

report

*:subj-group

@subj-group-type='category-toc-heading' and count(child::*:subject) > 1

nlm-core-rule-84

error

NLM-1-0089

JATS QA rules applying to metadata

checks for correct maximum nesting of TOC headings

report

*:subj-group

( @subj-group-type='category-toc-heading' and count(ancestor::*:subj-group) > 2 )

nlm-core-rule-104

error

JATS QA rules applying to metadata

<subject> within <subj-group subj-group-type="category-toc-heading"> must not contain an inline image.

report

*:subj-group

@subj-group-type = 'category-toc-heading' and child::*:subject/*:inline-graphic

nlm-core-rule-125

error

JATS QA rules applying to metadata

Checks subj-group elements have the correct value of @subj-group-type. This rule checks against the PoolParty controlled vocabulary 'TaxonomyType'.

assert

*:subj-group

@subj-group-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'TaxonomyType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-154

error

JATS QA rules applying to metadata

<subj-group subj-group-type="category-guideline"> must contain one <subject> element, containing the text "Medical Guideline" or "Public Policy".

report

*:subj-group

@subj-group-type = 'category-guideline' and not( count(child::*:subject) = 1 and ( child::*:subject/text() = 'Medical Guideline' or child::*:subject/text() = 'Public Policy' ) )

nlm-core-rule-144

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Checks that file extension for supplementary material is on the allowed list. This rule checks against the PoolParty controlled vocabulary 'FileType'.

assert

*:supplementary-material[parent::*:issue-meta]

*:self-uri[not(parent::*:book-meta/parent::*:book-part-wrapper)]

*:supplementary-material[not(parent::*:issue-meta or parent::*:book-meta/parent::*:book-part-wrapper)]

*:graphic

*:inline-graphic

nlm-core-rule-153

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

A file name for a PDF version of an article or a supplementary data file must not contain a space character.

report

*:supplementary-material[parent::*:issue-meta]

*:self-uri[not(parent::*:book-meta/parent::*:book-part-wrapper)]

*:supplementary-material[not(parent::*:issue-meta or parent::*:book-meta/parent::*:book-part-wrapper)]

*:graphic

*:inline-graphic

*:media

contains(@xlink:href,' ')

nlm-core-rule-169

fatal-error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Checks that files referenced exist on the filesystem.

report

*:supplementary-material[parent::*:issue-meta]

*:self-uri[not(parent::*:book-meta/parent::*:book-part-wrapper)]

*:supplementary-material[not(parent::*:issue-meta or parent::*:book-meta/parent::*:book-part-wrapper)]

*:graphic

*:inline-graphic

nlm-core-rule-248

error

JATS QA rules applying to metadata

issue-meta TOC and supplementary material should not have duplicate entries.

report

*:supplementary-material[parent::*:issue-meta]

*:toc-content

@xlink:href = preceding::*/@xlink:href

nlm-core-rule-123

error

JATS QA rules applying to metadata

Checks for correct structure of supplementary-material

assert

*:supplementary-material[not(parent::*:issue-meta)]

( @id and @content-type = 'data-supplement' and @xlink:href and child::*:label ) or ( @id and (@content-type = 'featured-figure' or @content-type = 'featured-audio' or @content-type = 'featured-video') and child::*:graphic )

nlm-core-rule-241

error

JATS QA rules applying to metadata

A file name for a supplementary data file must not contain an apostrophe.

report

*:supplementary-material[not(parent::*:issue-meta)]

contains(@xlink:href,'''')

nlm-core-rule-252

error

JATS QA rules applying to metadata

The value of the supplementary data label must match the filename minus the file extension.

report

*:supplementary-material[not(parent::*:issue-meta)]

*:label != substring-before(@xlink:href, '.') and not(@content-type = 'featured-figure' or @content-type = 'featured-audio' or @content-type = 'featured-video')

nlm-core-rule-218

error

JATS QA rules applying to metadata

Checks that toc-content/@pub-id-type attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'TOCIDType'.

assert

*:toc-content

@pub-id-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'TOCIDType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-129

error

JATS QA rules applying to metadata

Checks that @xml:lang attribute is used for translated abstracts.

assert

*:trans-abstract

@xml:lang

nlm-core-rule-151

error

JATS QA rules applying to metadata

Article may have at most one subtitle.

assert

*:title-group

count(child::*:subtitle) <= 1

nlm-core-rule-20

error

NLM-1-0019

Journals JATS complex

JATS QA rules applying to article metadata only (not issue meta)

Checks valid types of pub-date

assert

*:pub-date[not(tokenize(namespace-uri(/*),'/')[last()] = 'SCJATS-journalissue.xsd')][ if ( oupfn:doc-available('issue_meta.xml', base-uri())) then true() else false() ]

*:pub-date[not(tokenize(namespace-uri(/*),'/')[last()] = 'SCJATS-journalissue.xsd')]

nlm-core-rule-324

error

JATS and BITS QA rules applying to metadata

@iso-8601-date value must be a valid date.

assert

@iso-8601-date

(. castable as xs:date) or (. castable as xs:dateTime)

nlm-core-rule-11

error

NLM-1-0011

JATS and BITS QA rules applying to metadata

Abstract may not contain a single sec.

assert

*:abstract

(count(child::*:sec) != 1 and not(child::*:p)) or (child::*:p and not(child::*:sec))

nlm-core-rule-12

error

NLM-1-0012

JATS and BITS QA rules applying to metadata

Checks for presence of @abstract-type or @specific-use with correct value. This rule checks against the PoolParty controlled vocabulary 'AbstractType'.

assert

*:abstract

@abstract-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'AbstractType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text() or exists(/comment()[matches(.,'Converted to\s+(SC|)BITS')]) or @specific-use = 'layperson'

nlm-core-rule-119

error

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

JATS QA rules applying to specified content elements and attributes

Checks that element has a title. Exception: abstract with @abstract-type of "teaser".

assert

*:abstract

*:ack

*:ref-list

*:sec[parent::*:abstract]

child::*:title or (self::*:abstract and @abstract-type = 'teaser')

nlm-core-rule-167

warning

JATS and BITS QA rules applying to metadata

Warn if article abstract does not start with a word character.

report

*:abstract

(@abstract-type='abstract' or @abstract-type='teaser' or @specific-use='layperson') and (child::*:p|child::*:sec/*:p)[1][not(matches(normalize-space(string()),'^[\w|"|‘|“|“]'))]

nlm-core-rule-243

error

JATS and BITS QA rules applying to metadata

There should not be more than one abstract with @abstract-type='abstract'.

report

*:abstract

@abstract-type='abstract' and following-sibling::*:abstract[@abstract-type='abstract']

nlm-core-rule-344

error

JATS and BITS QA rules applying to metadata

Checks if abstract contains xref or related-object element.

report

*:abstract

descendant::*:xref or descendant::*:related-object

nlm-core-rule-133

error

JATS and BITS QA rules applying to metadata

Flags if aff or corresp in article metadata has a label child.

report

*:aff

*:corresp

self::node()[ (self::*:aff and parent::*:article-meta) or parent::*:author-notes ] [child::*:label]

nlm-core-rule-162

error

JATS and BITS QA rules applying to metadata

aff elements must not contain the patterns "Current address", "Present address", "On behalf of".

report

*:aff

matches( string(), '(([Pp]resent|[Cc]urrent) address|[Oo]n behalf of)' )

nlm-core-rule-206

error

JATS and BITS QA rules applying to metadata

The aff element must not contain an xref with @ref-type="aff".

report

*:aff

descendant::*:xref[@ref-type = 'aff']

nlm-core-rule-253

warning

JATS and BITS QA rules applying to metadata

An aff element should contain an institution element.

assert

*:aff

exists(child::*:institution)

nlm-core-rule-172

error

JATS and BITS QA rules applying to metadata

Checks element has @id

report

*:author-notes

@id

nlm-core-rule-321

error

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

report

*:author-notes

*:fig

.[child::*:p]

nlm-core-rule-146

error

JATS and BITS QA rules applying to metadata

Checks that award-group element has @award-type="grant".

assert

*:award-group

@award-type = 'grant'

nlm-core-rule-26

error

NLM-1-0026

JATS and BITS QA rules applying to metadata

contrib must not have both have a collab child and a name child.

report

*:contrib

child::*:name and child::*:collab

nlm-core-rule-27

error

NLM-1-0026

JATS and BITS QA rules applying to metadata

contrib should have either a single collab child or a single name or name-alternatives (with optional translations of that name).

assert

*:contrib

count(child::*:collab) = 1 or count(child::*:name-alternatives) = 1 or count(child::*:name[not(@xml:lang)]) = 1

nlm-core-rule-120

error

JATS and BITS QA rules applying to metadata

Checks contrib elements have the correct value of @contrib-type. This rule checks against the PoolParty controlled vocabulary 'ContributorType'.

assert

*:contrib

@contrib-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'ContributorType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-179

error

JATS and BITS QA rules applying to metadata

Checks that contrib element contains the correct child elements (name, name-alternatives, or collab). Also checks child elements of name and collab.

assert

*:contrib

child::*:name[child::*:given-names and child::*:surname] or child::*:collab[child::*:contrib-group or not(exists(/*:article))] or child::*:name[child::*:surname] or child::*:name-alternatives

nlm-core-rule-183

error

JATS and BITS QA rules applying to metadata

Checks role elements have the correct value.

report

*:contrib

@contrib-type = 'author' and child::*:role[contains(., 'ditor')]

nlm-core-rule-265

error

JATS and BITS QA rules applying to metadata

A contributor's address must not be captured using the address element.

report

*:contrib

child::*:address

nlm-core-rule-110

error

JATS and BITS QA rules applying to metadata

Element 'contrib-group' occurring inside 'collab' may not contain descendant 'collab' elements

report

*:contrib-group

ancestor::*:collab and descendant::*:collab

nlm-core-rule-300

error

JATS and BITS QA rules applying to metadata

A contrib-group element may only have child contrib or on-behalf-of elements. Aff elements must be captured within the relevant contrib element.

assert

*:contrib-group

not(.[following-sibling::aff]) and (every $c in child::* satisfies $c[self::*:contrib or self::*:on-behalf-of])

nlm-core-rule-111

error

JATS and BITS QA rules applying to metadata

ORCID ID validity check. An ORCID ID consists of four 4-digit strings separated by hyphens. The last checksum digit may be "X". ORCID may not be https://orcid.org/0000-0000-0000-0000.

report

*:contrib-id

@contrib-id-type = 'orcid' and ( matches(.,'^https://orcid.org/0000\-0000\-0000\-000[0X]$') or not( matches( ., '^https://orcid.org/\d\d\d\d\-\d\d\d\d\-\d\d\d\d\-\d\d\d[\dX]$' ) ) )

nlm-core-rule-240

error

JATS and BITS QA rules applying to metadata

ORCIDs must be unique. Please check that the ORCID values are correct.

report

*:contrib-id

@contrib-id-type = 'orcid' and text() = ./parent::*:contrib/preceding-sibling::*:contrib[not(deep-equal(*:name,current()/parent::*:contrib/*:name))]/*:contrib-id[@contrib-id-type = 'orcid']

nlm-core-rule-208

error

JATS and BITS QA rules applying to metadata

The copyright statement must not contain the text "Creative Commons" or "license".

report

*:copyright-statement

contains(string(), 'Creative Commons') or contains(string(), 'license')

nlm-core-rule-28

error

NLM-1-0027

JATS and BITS QA rules applying to metadata

Checks year and copyright-year for valid year range (between 1700 and 2100).

report

*:copyright-year

*:year

not( ancestor::*:citation or ancestor::*:nlm-citation or ancestor::*:mixed-citation or ancestor::*:element-citation or ancestor::*:product ) and ( string( translate( ., 'ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz', '' ) ) = 'NaN' or number( translate( ., 'ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz', '' ) ) > 2100 or number( translate( ., 'ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz', '' ) ) < 1700 or matches(., '\W') )

nlm-core-rule-32

error

NLM-1-0032

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

BITS QA rules applying to specified content elements and attributes

Checks element has @id

assert

*:related-article

*:sec[parent::*:abstract]

*:corresp

*:supplementary-material[not(parent::*:issue-meta or parent::*:book-meta/parent::*:book-part-wrapper)]

*:ack

*:fn

mml:math

*:ref

*:ref-list

*:table-wrap

*:tex-math

*:ack

*:book-app

*:book-part

*:boxed-text

*:fig

*:fig-group

*:front-matter-part

*:index

*:index-group

*:ref-list

*:sec

exists(/comment()[matches(.,'Converted to\s+(SC|)BITS')]) or (exists(@id) and string(@id) ne '')

nlm-core-rule-130

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Flags if no xref or related-object is found which targets the aff, corresp, or fn element.

assert

*:aff

*:corresp

*:fn

@id = //*:xref/@rid or @id = //*:related-object/@object-id or self::*:fn[parent::*:table-wrap-foot] or self::*:aff[parent::*:contrib]

nlm-core-rule-254

error

JATS and BITS QA rules applying to metadata

The value of the @country attribute must be a valid ISO 3166 code

assert

*:country

@country = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'Countries.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/csm:iso_3166_alpha2_code/text()

nlm-core-rule-29

error

NLM-1-0028

JATS and BITS QA rules applying to metadata

Dates with days specified must also specify a month.

report

*:date

*:pub-date

child::*:day and not(child::*:month)

nlm-core-rule-30

error

NLM-1-0029

JATS and BITS QA rules applying to metadata

Checks that days in dates are integers between 1 and 31 inclusive

report

*:date

*:pub-date

child::*:day[ not( ancestor::*:citation or ancestor::*:nlm-citation or ancestor::*:mixed-citation or ancestor::*:element-citation or ancestor::*:product ) and not( number(.) > 0 and number(.) < 32 ) ]

nlm-core-rule-31

error

NLM-1-0030

JATS and BITS QA rules applying to metadata

Months in dates must be captured as an integer between 1 and 12 (inclusive).

report

*:date

*:pub-date

not(@pub-type = 'cover') and child::*:month[ not( ancestor::*:citation or ancestor::*:nlm-citation or ancestor::*:mixed-citation or ancestor::*:element-citation or ancestor::*:product ) and not( number(.) > 0 and number(.) < 13 ) ]

nlm-core-rule-318

error

JATS and BITS QA rules applying to metadata

The degrees element must be placed immediately after the contributor name.

assert

*:degrees

.[preceding-sibling::*[1][self::*:name]]

nlm-core-rule-245

error

JATS and BITS QA rules applying to metadata

Edition element cannot contain more than 15 characters.

report

*:edition

ancestor::*:mixed-citation and (string-length(.) > 15 or string-length(.) = 0)

nlm-core-rule-42

error

NLM-1-0042

JATS and BITS QA rules applying to metadata

Checks that there is an lpage element if there is an fpage element

report

*:fpage

parent::*[self::*:article-meta or self::*:book-part-meta] and not(following-sibling::*:lpage)

nlm-core-rule-79

error

NLM-1-0084

JATS and BITS QA rules applying to metadata

Checks that there are no / or \ characters in fpage or elocation-id elements.

report

*:fpage

parent::*[self::*:article-meta or self::*:book-part-meta] and matches(., '[\\/]')

nlm-core-rule-242

error

JATS and BITS QA rules applying to metadata

Checks that fpage is not larger than lpage.

report

*:fpage

parent::*[self::*:article-meta or self::*:book-part-meta] and not(matches(., '\D')) and not(matches(following-sibling::*:lpage, '\D')) and number(.) > number(following-sibling::*:lpage)

nlm-core-rule-246

error

JATS and BITS QA rules applying to metadata

volume, issue, fpage and lpage elements cannot contain more than 32 characters, or 0 characters.

report

*:fpage

*:issue

*:lpage

*:volume

ancestor::*:mixed-citation and (string-length(.) > 32 or string-length(.) = 0)

nlm-core-rule-142

error

JATS and BITS QA rules applying to metadata

Checks that funder identifier is present alongside funder name.

report

*:funding-source

child::*:institution-wrap/*:institution[exists(document('helpers/fundref_registry.rdf')/rdf:RDF/skos:Concept[(skosxl:prefLabel|skosxl:altLabel)/skosxl:Label/skosxl:literalForm[text() = normalize-space( child::*:institution-wrap/*:institution ) ]] /@rdf:about )] and ( not(child::*:institution-wrap/*:institution-id) or normalize-space(child::*:institution-wrap/*:institution-id) = '' )

nlm-core-rule-143

warning

JATS and BITS QA rules applying to metadata

Checks that funder identifier is present alongside funder name and matches value in FundRef registry.

report

*:funding-source

normalize-space( child::*:institution-wrap/*:institution ) and normalize-space( child::*:institution-wrap/*:institution-id ) and not( document('helpers/fundref_registry.rdf')/rdf:RDF/skos:Concept[ (skosxl:prefLabel|skosxl:altLabel)/skosxl:Label/skosxl:literalForm/text() = normalize-space( child::*:institution-wrap/*:institution ) ][not(child::*:isReplacedBy)] /substring-after(@rdf:about, 'doi.org/') = normalize-space( child::*:institution-wrap/*:institution-id ))

nlm-core-rule-159

error

JATS and BITS QA rules applying to metadata

A funding source in an OA article must not contain a 'release-delay' processing instruction.

report

*:funding-source

if (/*:article/*:front/*:article-meta/*:permissions/*:license[starts-with(@license-type,'cc-')]) then true() else false() and child::processing-instruction('release-delay')[string() = '12|0' or string() = '0|0']

nlm-core-rule-274

error

JATS and BITS QA rules applying to metadata

A funding-source element must contain a institution-wrap element.

assert

*:funding-source

child::*:institution-wrap

nlm-core-rule-335

error

JATS and BITS QA rules applying to metadata

For Funding capture, the value of @institution-id-type must be "DOI" in all caps.

assert

*:institution-id

./@institution-id-type[matches(.,'^DOI$')]

nlm-core-rule-160

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

BITS QA rules applying to specified content elements and attributes

Certain elements (e.g. titles in abstracts, keywords, affiliations) should not end with punctuation or spaces.

assert

*:aff

*:degrees

*:kwd

*:title

*:label

self::*:title[not(parent::*:sec/ancestor::*:abstract)] or self::*:label[not(parent::*:sec or parent::*:title-group)] or not(matches(normalize-space(string()),'[,\.;:\-–—]$'))

nlm-core-rule-210

warning

JATS and BITS QA rules applying to metadata

A single keyword containing a ',' or ';' character is reported as a possible keyword list.

report

*:kwd-group

count(child::*:kwd) = 1 and ( contains(normalize-space(child::*:kwd), ',') or contains(normalize-space(child::*:kwd), ';') )

nlm-core-rule-94

error

NLM-1-0098

JATS and BITS QA rules applying to metadata

license element with creative commons @license-type must have a @xlink:href attribute whose value appears in the element's content.

report

*:license[not(ancestor::fig or ancestor::table-wrap or ancestor::graphic or ancestor::inline-graphic)]

parent::*:permissions/parent::*:article-meta and ( @license-type = 'creative-commons' or @license-type = 'open-access' or @license-type = 'cc-by' or @license-type = 'cc-by-nd' or @license-type = 'cc-by-nc-sa' or @license-type = 'cc-by-sa' or @license-type = 'cc-by-nc' or @license-type = 'cc-by-nc-nd' or @license-type = 'cc-by-igo' ) and ( not( @xlink:href and @xlink:href != '' ) or not( contains(string-join(descendant::text(),''), @xlink:href) ) )

nlm-core-rule-136

error

JATS and BITS QA rules applying to metadata

Checks for presence of @license-type with correct value. This rule checks against the PoolParty controlled vocabulary 'LicenseType'.

assert

*:license[not(ancestor::fig or ancestor::table-wrap or ancestor::graphic or ancestor::inline-graphic)]

@license-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'LicenseType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-164

error

JATS and BITS QA rules applying to metadata

In Open Access articles, the @xlink:href attribute of the license element must match that of its descendant ext-link element.

report

*:license[not(ancestor::fig or ancestor::table-wrap or ancestor::graphic or ancestor::inline-graphic)]

if (/*:article/*:front/*:article-meta/*:permissions/*:license[starts-with(@license-type,'cc-')]) then true() else false() and not( @xlink:href = descendant::*:ext-link/@xlink:href )

nlm-core-rule-88

error

NLM-1-0094a

JATS and BITS QA rules applying to metadata

Publication date must be a valid ISO 8601 date (YYYY-MM-DD).

report

*:pub-date

( child::*:year and child::*:month and child::*:day ) and not( oupfn:is-valid-ISO8601-date( concat( *:year, '-', *:month, '-', *:day) ) )

nlm-core-rule-89

error

NLM-1-0094b

JATS and BITS QA rules applying to metadata

Publication date must be a valid ISO 8601 date (YYYY-MM).

report

*:pub-date

not(@pub-type = 'cover') and ( child::*:year and child::*:month and not(child::*:day) ) and not( oupfn:is-valid-ISO8601-date( concat( *:year, '-', *:month ) ) )

nlm-core-rule-90

error

NLM-1-0094c

JATS and BITS QA rules applying to metadata

Publication date must be a valid ISO 8601 date (YYYY).

report

*:pub-date

( child::*:year and not(child::*:month) and not(child::*:day) ) and not( oupfn:is-valid-ISO8601-date(*:year) )

nlm-core-rule-157

error

NLM-1-0094a

JATS and BITS QA rules applying to metadata

Element pub-date where @pub-type="epub" or "collection" must have an @iso-8601-date attribute whose value corresponds to the contents of the day, month, and year children. Compare nlm-core-rule-88 and nlm-core-rule-20

report

*:pub-date

( @pub-type = ('epub','collection') or @publication-format = ('epub','ppub') or parent::*:event ) and ( not(@iso-8601-date) or not( starts-with(@iso-8601-date, concat( *:year, '-', *:month, '-', *:day) ) ) )

nlm-core-rule-219

error

JATS and BITS QA rules applying to metadata

Checks that pub-date/@publication-format attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'BookPubDateType'.

assert

*:pub-date

@publication-format = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'BookPubDateType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text() or exists(@pub-type) or parent::*:event

nlm-core-rule-100

error

NLM-1-0103b

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

ArXiv ID validity check. An ArXiv ID starts with "arXiv:".

report

*:article-id

*:pub-id

*:ref

@pub-id-type = 'arxiv' and not( starts-with(., 'arXiv:') )

nlm-core-rule-217

error

JATS and BITS QA rules applying to metadata

Checks that pub-id/@pub-id-type attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'BibRefIDType'.

assert

*:pub-id

@pub-id-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'BibRefIDType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text()

nlm-core-rule-222

error

JATS and BITS QA rules applying to metadata

Checks that related-object attribute has complete collection of attributes.

assert

*:related-object

( exists(@document-id) and exists(@document-id-type) and exists(@document-type) and empty(@object-id) and empty(@object-id-type) and empty(@object-type) and empty(@source-id) and empty(@source-id-type) and empty(@source-type) ) or ( exists(@source-id) and exists(@source-id-type) and exists(@source-type) and exists(@document-type) and empty(@object-id) and empty(@object-id-type) and empty(@object-type) and empty(@document-id) and empty(@document-id-type) ) or ( exists(@object-id) and exists(@object-id-type) and exists(@object-type) and exists(@document-id) and exists(@document-id-type) and exists(@document-type) and empty(@source-id) and empty(@source-id-type) and empty(@source-type) )

nlm-core-rule-223

error

JATS and BITS QA rules applying to metadata

Checks that related-object/@document-type attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'RelatedObjectDocType'.

assert

*:related-object

@document-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'RelatedObjectDocType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text() or not(exists(@document-type))

nlm-core-rule-224

error

JATS and BITS QA rules applying to metadata

Checks that related-object/@document-id-type attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'RelatedObjectDocIDType'.

assert

*:related-object

@document-id-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'RelatedObjectDocIDType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text() or not(exists(@document-id-type))

nlm-core-rule-225

error

JATS and BITS QA rules applying to metadata

Checks that related-object/@source-type attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'RelatedObjectURLType'.

assert

*:related-object

@source-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'RelatedObjectURLType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text() or not(exists(@source-type))

nlm-core-rule-226

error

JATS and BITS QA rules applying to metadata

Checks that related-object/@source-id-type attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'RelatedObjectURLIDType'.

assert

*:related-object

@source-id-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'RelatedObjectURLIDType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text() or not(exists(@source-id-type))

nlm-core-rule-227

error

JATS and BITS QA rules applying to metadata

Checks that related-object/@object-type attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'RelatedObjectType'.

assert

*:related-object

@object-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'RelatedObjectType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text() or not(exists(@object-type))

nlm-core-rule-228

error

JATS and BITS QA rules applying to metadata

Checks that related-object/@object-id-type attribute has valid value. This rule checks against the PoolParty controlled vocabulary 'RelatedObjectIDType'.

assert

*:related-object

@object-id-type = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'RelatedObjectIDType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)]/skos:prefLabel/text() or not(exists(@object-id-type))

nlm-core-rule-144

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Checks that file extension for supplementary material is on the allowed list. This rule checks against the PoolParty controlled vocabulary 'FileType'.

assert

*:supplementary-material[parent::*:issue-meta]

*:self-uri[not(parent::*:book-meta/parent::*:book-part-wrapper)]

*:supplementary-material[not(parent::*:issue-meta or parent::*:book-meta/parent::*:book-part-wrapper)]

*:graphic

*:inline-graphic

nlm-core-rule-153

error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

A file name for a PDF version of an article or a supplementary data file must not contain a space character.

report

*:supplementary-material[parent::*:issue-meta]

*:self-uri[not(parent::*:book-meta/parent::*:book-part-wrapper)]

*:supplementary-material[not(parent::*:issue-meta or parent::*:book-meta/parent::*:book-part-wrapper)]

*:graphic

*:inline-graphic

*:media

contains(@xlink:href,' ')

nlm-core-rule-169

fatal-error

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Checks that files referenced exist on the filesystem.

report

*:supplementary-material[parent::*:issue-meta]

*:self-uri[not(parent::*:book-meta/parent::*:book-part-wrapper)]

*:supplementary-material[not(parent::*:issue-meta or parent::*:book-meta/parent::*:book-part-wrapper)]

*:graphic

*:inline-graphic

nlm-core-rule-55

error

NLM-1-0056

JATS and BITS QA rules applying to metadata

subject element may not contain formatting or linking elements.

report

*:subject

( .//*:bold or .//*:monospace or .//*:overline or .//*:sc or .//*:strike or .//*:underline or .//*:xref )

nlm-core-rule-3

error

NLM-1-0003

JATS QA rules applying to metadata

JATS and BITS QA rules applying to metadata

JATS and BITS QA rules applying to specified content elements and attributes

Certain elements may not contain only typographic formatting

assert

*:article-title

*:subtitle

*:p

*:title

nlm-core-rule-3b

error

JATS and BITS QA rules applying to metadata

Certain elements may not contain only typographic formatting

report

*:subtitle

not(doc-available('helpers/scout/Publishers.rdf')) and not( child::text()[normalize-space(.) != ''] )

nlm-core-rule-258

error

JATS and BITS QA rules applying to metadata

@mimetype attribute of graphic, inline-graphic, or supplementary-material must have value "application", "audio", "video", "image", "model", or "text". This rule checks against the PoolParty controlled vocabulary 'MIMEType'.

assert

*:supplementary-material[not(parent::*:issue-meta or parent::*:book-meta/parent::*:book-part-wrapper)]

child::*:graphic/@mimetype or (@mimetype = document( concat( if (doc-available('poolparty/Publishers.rdf')) then 'poolparty/' else ( if (not(doc-available('helpers/scout/Publishers.rdf'))) then '/docs/' else 'helpers/scout/' ),'MIMEType.rdf') )/rdf:RDF/rdf:Description[oupca:isTaxonomyNode(.)][child::skos:broader[@rdf:resource = 'http://data.oup.com/taxonomy/MIMEType/9']]/skos:prefLabel/text())

nlm-core-rule-266

error

BITS QA rules applying to book and book-part metadata

JATS and BITS QA rules applying to metadata

An alt-title is not required.

report

*:book-title-group

*:title-group

child::*:alt-title

nlm-core-rule-270

error

BITS QA rules applying to book and book-part metadata

JATS and BITS QA rules applying to metadata

<inline-formula> is not permitted within book, chapter or article titles.

report

*:book-title-group

*:title-group

(empty(//*:collection-meta[@collection-type = 'set']/*:collection-id/text()) or not(self::*:book-title)) and descendant::*:inline-formula

jrn-issue-meta-core-rule-1

information

Journals issue metadata

Sanity Check - make sure Schematron rules are running.

report

*:issue-meta

self::*:issue-meta

jrn-issue-meta-core-rule-2

error

Journals issue metadata

An issue meta file may not contain both an attribute @dynamic-toc-type="topic-driven" and a table-of-contents element.

report

*:issue-meta

@dynamic-toc-type = 'topic-driven' and child::*:table-of-contents

jrn-issue-meta-core-rule-4

error

Journals issue metadata

If an issue meta file has issue @content-type="supplement", then it must have <issue-type>supplemental</issue-type>.

report

*:issue-meta

descendant::*:issue[contains(., 'uppl')] and not(*:issue-type= 'supplemental')

jrn-issue-meta-core-rule-5

warning

Journals issue metadata

Issue meta files may have either a ppub pub-date or collection pub-date, but never both.

report

*:issue-meta

child::*:pub-date[@pub-type='ppub'] and child::*:pub-date[@pub-type='collection']

jrn-issue-meta-core-rule-6

error

Journals issue metadata

Issue meta files must not have an epub pub-date.

report

*:issue-meta

child::*:pub-date[@pub-type='epub']

jrn-issue-meta-core-rule-7

error

Journals issue metadata

Issue meta files must have a valid journal code.

assert

*:issue-meta

child::*:journal-id/text() = document('helpers/journals-metadata/journals-master-list.xml')/jml:journals-master-list/jml:journal/jml:oup_code/text()

jrn-issue-meta-core-rule-8

error

Journals issue metadata

Issue meta file containing a full issue PDF self-uri link is only allowed when issue is supplemental

report

*:issue-meta

descendant::*:self-uri and not(*:issue-type= 'supplemental')

jrn-issue-meta-core-rule-9

error

Journals issue metadata

Issue meta files must use v1.42 of SCJATS.

assert

*:issue-meta

namespace-uri() = 'http://specifications.silverchair.com/xsd/1/42/SCJATS-journalissue-mathml3.xsd'